YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: STR1_ARATH
Organism: Arabidopsis thaliana
Length: 379 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for STR1_ARATH.

Description E-value Query
Range
Subject
Range
gi|25288794, gi|... - gi|6686778|emb|CAB64716.1| 3-mercaptopyruvate sulfurtransferase [Arabidopsis thaliana], pir||T52658 ...
318.0 [0..1] [379..1]

Back

Predicted Domain #1
Region A:
Residues: [1-62]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASTLFSRTF LAASHRLITP SLPQKIFNPA TFLSRSLHSQ LGSASTAYKS TTWARRAMAS  60
   61 TG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [63-379]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VETKAGYSTS SVSTSEPVVS VDWLHANLRE PDLKILDASW YMPDEQRNPI QEYQVAHIPR  60
   61 ALFFDLDGIS DRKTSLPHML PTEEAFAAGC SALGIDNKDE VVVYDGKGIF SAARVWWMFR 120
  121 VFGHEKVWVL DGGLPRWRAS GYDVESSASG DAILKASAAS EAIEKIYQGQ TVSPITFQTK 180
  181 FQPHLVWTLD QVKNNMEDPT YQHIDARSKA RFDGTAPEPR KGIRSGHIPG SKCIPFPQMF 240
  241 DSCNTLLPAE ELKKRFDQED ISLDKPIMAS CGTGVTACIL AMGLHRLGKT DVPIYDGSWT 300
  301 EWATQPDLPI ESVESSS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 62.69897
Match: 1urhA
Description: The "Rhodanese" fold and catalytic mechanism of 3-mercaptopyruvate sulfotransferases: Crystal structure of SseA from Escherichia coli
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
thiosulfate sulfurtransferase activity 4.07143118207301 bayes_pls_golite062009
sulfurtransferase activity 2.90539767285523 bayes_pls_golite062009
transferase activity, transferring sulfur-containing groups 2.27106357502695 bayes_pls_golite062009
protein tyrosine phosphatase activity 0.83774799640503 bayes_pls_golite062009
binding 0.707400650337243 bayes_pls_golite062009
catalytic activity 0.687308230067573 bayes_pls_golite062009
phosphoprotein phosphatase activity 0.604322283158386 bayes_pls_golite062009
transferase activity 0.302497611306574 bayes_pls_golite062009
protein binding 0.26324773851743 bayes_pls_golite062009
phosphatase activity 0.0565207759893606 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle