| Protein: | CNGC6_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 747 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CNGC6_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
407.0 | [0..4] | [746..3] |
|
Region A: Residues: [1-84] |
1 11 21 31 41 51
| | | | | |
1 MFDTCGPKGV KSQVISGQRE NFVRLDSMDS RYSQSSETGL NKCTLNIQGG PKRFAQGSKA 60
61 SSGSFKKGFR KGSEGLWSIG RSIG
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [85-230] |
1 11 21 31 41 51
| | | | | |
1 LGVSRAVFPE DLEVSEKKIF DPQDKFLLLC NKLFVASCIL AVSVDPLFLY LPFINDKAKC 60
61 VGIDRKLAII VTTIRTVIDS FYLFHMALRF RTAYVAPSSR VFGRGELVID PAQIAKRYLQ 120
121 QYFIIDLLSV LPVPQIIVWR FLYTSR
|
| Detection Method: | |
| Confidence: | 1.5 |
| Match: | 2a0lA |
| Description: | Crystal structure of KvAP-33H1 Fv complex |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [231-497] |
1 11 21 31 41 51
| | | | | |
1 GANVLATKQA LRYIVLVQYI PRFLRMYPLS SELKRTAGVF AETAWAGAAY YLLLYMLASH 60
61 IVGALWYLLA LERNNDCWSK ACHNNQNCTR NFLFCGNQNM KGYAAWDNIK VSYLQLKCPV 120
121 NVPEDEEPPF DFGIYLRALS SGIVSSKNFV SKYFFCLWWG LQNLSTLGQG LETSTYPGEV 180
181 IFSITLAIAG LLLFALLIGN MQTYLQSLTI RLEEMRVKRR DSEQWMHHRM LPPELRERVR 240
241 RYDQYKWLET RGVDEENLVQ NLPKDLR
|
| Detection Method: | |
| Confidence: | 16.221849 |
| Match: | 2a79B |
| Description: | Mammalian Shaker Kv1.2 potassium channel- beta subunit complex |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [498-650] |
1 11 21 31 41 51
| | | | | |
1 RDIKRHLCLA LVRRVPLFEN MDERLLDAIC ERLKPCLFTE KSYLVREGDP VNEMLFIIRG 60
61 RLESVTTDGG RSGFYNRSLL KEGDFCGDEL LTWALDPKSG SNLPSSTRTV KALTEVEAFA 120
121 LIADELKFVA SQFRRLHSRQ VQHTFRFYSQ QWR
|
| Detection Method: | |
| Confidence: | 18.221849 |
| Match: | 1wgpA |
| Description: | Solution structure of the cNMP-binding domain from Arabidopsis thaliana cyclic nucleotide-regulated ion channel |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| cyclic nucleotide-gated ion channel activity | 9.28636958853471 | bayes_pls_golite062009 |
| intracellular cyclic nucleotide activated cation channel activity | 9.28636958853471 | bayes_pls_golite062009 |
| intracellular cGMP activated cation channel activity | 9.19973076787954 | bayes_pls_golite062009 |
| intracellular ligand-gated ion channel activity | 8.92326348606261 | bayes_pls_golite062009 |
| cGMP binding | 7.7575871125398 | bayes_pls_golite062009 |
| cyclic nucleotide binding | 7.37322432929433 | bayes_pls_golite062009 |
| GMP binding | 5.49455172024846 | bayes_pls_golite062009 |
| ligand-gated channel activity | 2.24160712920592 | bayes_pls_golite062009 |
| ligand-gated ion channel activity | 2.24160712920592 | bayes_pls_golite062009 |
| metal ion transmembrane transporter activity | 2.1641765932136 | bayes_pls_golite062009 |
| ion channel activity | 1.99113461395381 | bayes_pls_golite062009 |
| gated channel activity | 1.96880619620616 | bayes_pls_golite062009 |
| channel activity | 1.95481941885364 | bayes_pls_golite062009 |
| passive transmembrane transporter activity | 1.95481941885364 | bayes_pls_golite062009 |
| substrate-specific channel activity | 1.9532743483506 | bayes_pls_golite062009 |
| cation channel activity | 1.8875306855156 | bayes_pls_golite062009 |
| binding | 1.03706428234992 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 0.745476294699195 | bayes_pls_golite062009 |
| ion transmembrane transporter activity | 0.646885146396875 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 0.582561336941853 | bayes_pls_golite062009 |
| protein binding | 0.560659365968498 | bayes_pls_golite062009 |
| cation transmembrane transporter activity | 0.489669604147601 | bayes_pls_golite062009 |
| transporter activity | 0.232363663369302 | bayes_pls_golite062009 |
| transmembrane transporter activity | 0.209203009093296 | bayes_pls_golite062009 |
|
Region A: Residues: [651-747] |
1 11 21 31 41 51
| | | | | |
1 TWAACFMQAA WRRYIKRKKL EQLRKEEEEE EAAAASVIAG GSPYSIRATF LASKFAANAL 60
61 RSVHKNRTAK STLLLSSTKE LVKFQKPPEP DFSAEDH
|
| Detection Method: | |
| Confidence: | 29.39794 |
| Match: | 1i5zA |
| Description: | Catabolite gene activator protein (CAP), C-terminal domain; Catabolite gene activator protein, N-terminal domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.33495708130358 | bayes_pls_golite062009 |
| DNA binding | 1.3643232454136 | bayes_pls_golite062009 |
| nucleic acid binding | 1.27790965988833 | bayes_pls_golite062009 |
| transcription regulator activity | 0.931016322768698 | bayes_pls_golite062009 |
| transcription factor activity | 0.880776321779274 | bayes_pls_golite062009 |
| protein binding | 0.501337284874473 | bayes_pls_golite062009 |
| transcription activator activity | 0.225529556408477 | bayes_pls_golite062009 |
