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View Structure Prediction Details

Protein: ubc-26
Organism: Caenorhabditis elegans
Length: 203 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ubc-26.

Description E-value Query
Range
Subject
Range
gi|39584694, gi|... - gi|39584694|emb|CAE72447.1| Hypothetical protein CBG19617 [Caenorhabditis briggsae], gi|187024120|em...
182.0 [0..1] [187..1]

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Predicted Domain #1
Region A:
Residues: [1-203]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSGVSTVAL QRLKKDYQRL LKEPVPFMKA APLETNILEW RYIIIGAPKT PYEGGIYMGK  60
   61 LLFPKDFPFK PPAILMLTPN GRFQTNTRLC LSISDYHPDT WNPAWTVSTI ITGLMSFMND 120
  121 NQPTLGSLVT SESERKLLAK KSKQWNLKDK SFCALFPEEA DQIREEMEKM NQQELDSIRE 180
  181 EETAIKNRYG LKKHGKSPEI WAF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 40.69897
Match: 2f4wA
Description: Human ubiquitin-conjugating enzyme E2 J2
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.36134415541475 bayes_pls_golite062009
ligase activity 0.0718869348666398 bayes_pls_golite062009
ligase activity, forming carbon-nitrogen bonds 0.0371971638467299 bayes_pls_golite062009
acid-amino acid ligase activity 0.0334819228148397 bayes_pls_golite062009
small conjugating protein ligase activity 0.0318206634586797 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle