| Protein: | pif-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 677 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pif-1.
| Description | E-value | Query Range |
Subject Range |
|
|
373.0 | [0..3] | [657..75] |
|
Region A: Residues: [1-113] |
1 11 21 31 41 51
| | | | | |
1 MSKSLQTDEN GGVSESPSNC TYCYTLECSL RIESTSSIKK KTPISSKSAI MTVGRNAQRK 60
61 IHLQIELKTT ATGQPAVVCY DVTDAVVHLQ SVANGKCTVE IPSLSLMFQM FNC
|
| Detection Method: |  |
| Confidence: | 3.522879 |
| Match: | 1qvrA |
| Description: | Crystal Structure Analysis of ClpB |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [114-677] |
1 11 21 31 41 51
| | | | | |
1 APRKLNVFMK SLQAKLDIMK MEKSPISAVP RQFSRPPAVF SVLSPLTISE MRKVKKLREP 60
61 SALARPSKEA TTPKRRTSSM NLLAGGLENR IMNRSIGLKR TTSFARDDRE KAETLVSLKS 120
121 FKDAPAISER IQLSDEQKSV VRCVINSRTS VFFTGSAGTG KSVILRRIIE MLPAGNTYIT 180
181 AATGVAASQI GGITLHAFCG FRYENSTPEQ CLKQVLRQNH MVRQWKQCSH LIIDEISMID 240
241 RDFFEALEYV ARTVRNNDKP FGGIQLIITG DFFQLPPVSK DEPVFCFESE AWSRCIQKTI 300
301 VLKNVKRQND NVFVKILNNV RVGKCDFKSA DILKESSKNQ FPSSVIPTKL CTHSDDADRI 360
361 NSSSIETTQG DAKTFHAYDD ESFDTHAKAR TLAQKKLVLK VGAQVMLIKN IDVIKGLCNG 420
421 SRGFVEKFSE NGNPMIRFVS QADASIEIRR SKFSVRIPGS DAPLIRRQLP LQLAWAISIH 480
481 KSQGMTLDCA EISLERVFAD GQAYVALSRA RSLAAIRIIG FDASCVRANS KVIDFYKSIE 540
541 AECDDEQDWE APAAGPRLKR VRSI
|
| Detection Method: | |
| Confidence: | 46.0 |
| Match: | 1w36D |
| Description: | RecBCD:DNA complex |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| telomeric DNA binding | 4.27839338838273 | bayes_pls_golite062009 |
| single-stranded telomeric DNA binding | 2.76169895887092 | bayes_pls_golite062009 |
| DNA-dependent ATPase activity | 2.72462789867829 | bayes_pls_golite062009 |
| double-stranded telomeric DNA binding | 2.66745455858981 | bayes_pls_golite062009 |
| binding | 2.64537357529343 | bayes_pls_golite062009 |
| DNA helicase activity | 2.2817164193758 | bayes_pls_golite062009 |
| nucleic acid binding | 2.21184938313192 | bayes_pls_golite062009 |
| DNA binding | 1.94055378599526 | bayes_pls_golite062009 |
| ATP-dependent DNA helicase activity | 1.88455339138556 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 1.84050240798436 | bayes_pls_golite062009 |
| transcription regulator activity | 1.83584389083042 | bayes_pls_golite062009 |
| pyrophosphatase activity | 1.81138802583782 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides | 1.78927528875848 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 1.78903889318615 | bayes_pls_golite062009 |
| helicase activity | 1.70242731830224 | bayes_pls_golite062009 |
| deoxyribonuclease activity | 1.66853770005159 | bayes_pls_golite062009 |
| protein-DNA loading ATPase activity | 1.29640539057136 | bayes_pls_golite062009 |
| hydrolase activity | 1.29419296935491 | bayes_pls_golite062009 |
| purine NTP-dependent helicase activity | 1.19311444180077 | bayes_pls_golite062009 |
| ATP-dependent helicase activity | 1.19311444180077 | bayes_pls_golite062009 |
| ATPase activity | 1.18431260772292 | bayes_pls_golite062009 |
| DNA-directed DNA polymerase activity | 1.17617511072239 | bayes_pls_golite062009 |
| motor activity | 1.14667913749579 | bayes_pls_golite062009 |
| DNA polymerase activity | 1.14104131900023 | bayes_pls_golite062009 |
| DNA clamp loader activity | 1.12431517057397 | bayes_pls_golite062009 |
| catalytic activity | 1.00104173493322 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.782430219754236 | bayes_pls_golite062009 |
| transcription factor activity | 0.697256579145077 | bayes_pls_golite062009 |
| double-stranded DNA binding | 0.6071273686445 | bayes_pls_golite062009 |
| microtubule motor activity | 0.60036517876321 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.500462538667228 | bayes_pls_golite062009 |
| DEAD/H-box RNA helicase binding | 0.498523632581808 | bayes_pls_golite062009 |
| protein binding | 0.170837278876362 | bayes_pls_golite062009 |
| nucleotide binding | 0.114848452385726 | bayes_pls_golite062009 |
| purine nucleotide binding | 0.10713474095071 | bayes_pls_golite062009 |
| purine ribonucleotide binding | 0.0916519414118148 | bayes_pls_golite062009 |
| ribonucleotide binding | 0.0915913646217636 | bayes_pls_golite062009 |
| 3'-5' DNA helicase activity | 0.0769112340058804 | bayes_pls_golite062009 |
| actin binding | 0.00482938540552702 | bayes_pls_golite062009 |
