Protein: | unc-38 |
Organism: | Caenorhabditis elegans |
Length: | 511 amino acids |
Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for unc-38.
Description | E-value | Query Range |
Subject Range |
|
408.0 | [0..1] | [511..1] |
Region A: Residues: [1-376] |
1 11 21 31 41 51 | | | | | | 1 MRSFWLFLLL LLFCISFIKL TEGNEDAKRL YDDLMVNYNR HRRPSTSPNK PLTIKLKLRL 60 61 SQIIDVHEID QIMTCSVWLK QTWIDRKLSW DPVNYGGVNV LYVPYEMIWV PDIVLYNNAD 120 121 SNYNITISTK ATLHYTGEVT WEPPAIFKSM CQIDVRWFPF DEQQCHLKFG SWTFSENLLS 180 181 VELNEPSLRY EEEIDEKGII DNVTVAEDGI DLSDYYPSVE WDIMSRVAKR RAKNYPSCCP 240 241 QSAYIDVTYY LQLRRKPLFY TVNLVFPCVG ISFLTILVFY LPSDSGEKVT LCISILVALT 300 301 IFFLLLTEII PATSITLPLI GKYLLFTMVM VTLSVVVTVI SLNLHFRTPT THLMPNWVKK 360 361 VFLKWLPKLL FMRRPI |
Detection Method: | |
Confidence: | 76.221849 |
Match: | 2bg9A |
Description: | Refined structure of the nicotinic acetylcholine receptor at 4A resolution. |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [377-511] |
1 11 21 31 41 51 | | | | | | 1 DDYEEKFDDK KKPKDGKIAL SVHAHRVSNV GNNIRNATID DTIQKMYYSP PVVKAFENIC 60 61 FIAELLKKKD RDDKIDEDWK YVAMVLDRLF LLIFSIACFV GTVIILLRAP TLYDTRQPID 120 121 LQYRPANLSA NPISF |
Detection Method: | |
Confidence: | 39.522879 |
Match: | 1oedB |
Description: | Acetylcholine receptor protein, beta chain |
Matching Structure (courtesy of the PDB): |
Term | Confidence | Notes |
acetylcholine binding | 13.9752632471881 | bayes_pls_golite062009 |
acetylcholine receptor activity | 13.7533645836795 | bayes_pls_golite062009 |
nicotinic acetylcholine-activated cation-selective channel activity | 13.1511875247796 | bayes_pls_golite062009 |
metal ion transmembrane transporter activity | 11.9525876011069 | bayes_pls_golite062009 |
extracellular ligand-gated ion channel activity | 11.7813202122163 | bayes_pls_golite062009 |
excitatory extracellular ligand-gated ion channel activity | 11.7813202122163 | bayes_pls_golite062009 |
cation channel activity | 11.7442066737514 | bayes_pls_golite062009 |
ion channel activity | 11.1753684044644 | bayes_pls_golite062009 |
passive transmembrane transporter activity | 11.0903806681397 | bayes_pls_golite062009 |
channel activity | 11.0903806681397 | bayes_pls_golite062009 |
gated channel activity | 11.0397691626728 | bayes_pls_golite062009 |
substrate-specific channel activity | 10.9375522860542 | bayes_pls_golite062009 |
ligand-gated channel activity | 9.34902726749692 | bayes_pls_golite062009 |
ligand-gated ion channel activity | 9.34902726749692 | bayes_pls_golite062009 |
amine binding | 9.11982124959723 | bayes_pls_golite062009 |
chloride channel regulator activity | 9.10587892909341 | bayes_pls_golite062009 |
ion transmembrane transporter activity | 7.22265353460749 | bayes_pls_golite062009 |
cation transmembrane transporter activity | 7.19173677417054 | bayes_pls_golite062009 |
substrate-specific transmembrane transporter activity | 6.7875346065164 | bayes_pls_golite062009 |
transmembrane receptor activity | 5.4080353535498 | bayes_pls_golite062009 |
receptor activity | 5.11329651194787 | bayes_pls_golite062009 |
transporter activity | 5.11262082564788 | bayes_pls_golite062009 |
transmembrane transporter activity | 5.03439798256257 | bayes_pls_golite062009 |
substrate-specific transporter activity | 4.91314874981447 | bayes_pls_golite062009 |
neurotransmitter binding | 4.25797760547212 | bayes_pls_golite062009 |
neurotransmitter receptor activity | 4.15404686068319 | bayes_pls_golite062009 |
signal transducer activity | 4.12549692767753 | bayes_pls_golite062009 |
molecular transducer activity | 4.12549692767753 | bayes_pls_golite062009 |
adenylate cyclase binding | 3.30190657223613 | bayes_pls_golite062009 |
binding | 2.4916526322278 | bayes_pls_golite062009 |
beta-amyloid binding | 2.25766805801029 | bayes_pls_golite062009 |
1.68370717591127 | bayes_pls_golite062009 | |
channel regulator activity | 1.66978990310631 | bayes_pls_golite062009 |
protein binding | 1.45740893920165 | bayes_pls_golite062009 |
G-protein coupled receptor activity | 1.42422063123689 | bayes_pls_golite062009 |
serotonin binding | 1.33584589886834 | bayes_pls_golite062009 |
serotonin-activated cation-selective channel activity | 1.31324203158511 | bayes_pls_golite062009 |
toxin binding | 1.03329843925063 | bayes_pls_golite062009 |
drug binding | 0.64715018605883 | bayes_pls_golite062009 |
kinase binding | 0.365355763029699 | bayes_pls_golite062009 |
protein kinase binding | 0.350601457777817 | bayes_pls_golite062009 |