YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CE01076
Organism: Caenorhabditis elegans
Length: 681 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE01076.

Description E-value Query
Range
Subject
Range
gi|114587962 - gi|114587962|ref|XP_516593.2| PREDICTED: glucan (1,4-alpha-), branching enzyme 1 (glycogen branching...
528.0 [0..6] [680..141]

Back

Predicted Domain #1
Region A:
Residues: [1-681]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVNTRPPKID ELLKIDPYLH DFQDEISRRY GVFLDYQRRI EECGGMEEFT SSYKQFGLNV  60
   61 QPDNSVKGLE WAPAAEKLAL IGDFNNWDQN ANVYKKEEHG KWSITVPAKE DGSCPIPHNS 120
  121 VIKIAVSRHG ATHFKLSPWA TFVTCPNPKE TVIYHQNFWN PPEKYQLKEA RPARPASLRI 180
  181 YEAHVGISSS EGKINTYREF ADDVLPRIQK QGYNAIQLMA VMEHVYYASF GYQVSNFFAV 240
  241 SSRCGTPEDL KYLVDKAHSL GIFMLLDVVH SHASKNVEDG LNQWDGSNGG YFHDNARGYH 300
  301 NLWDSRLFDY TQTETLRFLL SNVRWWVEEY GFDGFRFDGV SSMIYHSHGM NDDFCGGYPM 360
  361 YFGLNADTDS LVYLMLANDF LHKKYPFMIT IAEEVSGMPG ICRPVEEGGQ GFDYRLAMAL 420
  421 PDMWIKILKH TSDEDWKIDD IVFNLENRRY AEKHVAYAES HDQALVGDKT IAFWLMDKEM 480
  481 YDFMSTDSPL TPIIDRGLSL HKLIRLITIG LGGEAWLNFI GNEFGHPEWL DFPRVGNGES 540
  541 FHYARRQFNL VDAEYLRYKF LNNWDREMML LEERTGFLHK GYAYTSWKHD GDKTIVFERG 600
  601 GLVFVINLHP TKSFADYSIG VNTPGRYRIA LNSDESKFGG HNRIDNSIKF HTTDDGYAGR 660
  661 RHRLQVYITC RTAIVLEKED D

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 121.0
Match: 1m7xA
Description: 1,4-alpha-glucan branching enzyme, N-terminal domain N; 1,4-alpha-glucan branching enzyme; 1,4-alpha-glucan branching enzyme, central domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
hydrolase activity, acting on glycosyl bonds 3.87554479203059 bayes_pls_golite062009
hydrolase activity, hydrolyzing O-glycosyl compounds 3.47174391073813 bayes_pls_golite062009
catalytic activity 1.85569074294201 bayes_pls_golite062009
phosphorylase activity 0.99159540154441 bayes_pls_golite062009
glucosidase activity 0.766503513427695 bayes_pls_golite062009
hexosaminidase activity 0.763360027922833 bayes_pls_golite062009
cation transmembrane transporter activity 0.687079660016821 bayes_pls_golite062009
sugar binding 0.52048704356718 bayes_pls_golite062009
chitinase activity 0.500233744020165 bayes_pls_golite062009
ion transmembrane transporter activity 0.498330151821515 bayes_pls_golite062009
binding 0.391406996198514 bayes_pls_golite062009
carbohydrate binding 0.31275257729319 bayes_pls_golite062009
transferase activity, transferring hexosyl groups 0.266938437560648 bayes_pls_golite062009
beta-N-acetylhexosaminidase activity 0.263065978664289 bayes_pls_golite062009
hydrolase activity 0.15436539680525 bayes_pls_golite062009
ligand-gated ion channel activity 0.0325030313870961 bayes_pls_golite062009
ligand-gated channel activity 0.0325030313870961 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle