YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCPB1C11.03
Organism:	Schizosaccharomyces pombe
Length:	570 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCPB1C11.03.

Description	E-value	Query Range	Subject Range
gi\|16080636, gi\|... - gi\|2636109\|emb\|CAB15600.1\| ywtG [Bacillus subtilis subsp. subtilis str. 168], gi\|16080636\|ref\|NP_391... gi\|7446721, gi\|1... - pir\|\|E70070 metabolite transport protein homolog ywtG - Bacillus subtilis, gi\|1894771\|emb\|CAB07473.1...	210.0	[0..100]	[528..7]
gi\|67668083, gi\|... - gi\|67668083\|ref\|ZP_00465278.1\| General substrate transporter:Major facilitator superfamily [Burkhold...	208.0	[0..59]	[523..1002]
gi\|67903516, gi\|... - gi\|67903516\|ref\|XP_682014.1\| hypothetical protein AN8745.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	208.0	[0..68]	[541..9]
gi\|91078244 - gi\|91078244\|ref\|XP_970364.1\| PREDICTED: similar to CG10960-PB, isoform B [Tribolium castaneum]	208.0	[0..2]	[528..591]
gi\|49527412 - gi\|49527412\|emb\|CAG61052.1\| unnamed protein product [Candida glabrata] gi\|50291337, gi\|... - gi\|50291337\|ref\|XP_448101.1\| unnamed protein product [Candida glabrata], gi\|49527412\|emb\|CAG61052.1\|...	201.0	[0..52]	[564..68]
gi\|38104993, gi\|... - gi\|39969567\|ref\|XP_366174.1\| hypothetical protein MG10393.4 [Magnaporthe grisea 70-15], gb\|EAA51477....	199.0	[0..50]	[569..2]
gi\|238882568 - gi\|238882568\|gb\|EEQ46206.1\| conserved hypothetical protein [Candida albicans WO-1] gi\|46436207, gi\|... - gi\|68482987\|ref\|XP_714624.1\| hypothetical protein CaO19.3208 [Candida albicans SC5314], gi\|68482720\|... orf19.3208, orf1... - DAL52 CGDID:CAL0003200 Assembly 19, Contig19-10170 (96763, 95123) CDS, reverse complemented, transla...	198.0	[0..16]	[570..11]
gi\|115400185, gi... - gi\|115400185\|ref\|XP_001215681.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	197.0	[0..41]	[569..16]
gi\|90307566, gi\|... - gi\|90307566\|gb\|EAS37197.1\| hypothetical protein CIMG_02551 [Coccidioides immitis RS], gi\|119196353\|r...	197.0	[0..40]	[543..190]

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Predicted Domain #1

Region A:
Residues: [1-570]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTESIISSRT ASISSKEGYE IRQGSTDSSS LDLEKKENAV DTTIAKPFDS DEDIADVEKA  60
   61 GGKKINNSLI DETFAFMQDA KKLDPLTPKQ ESKLKWKLYI YLLLMLGFLD MMLFIGKATL 120
  121 SYSTILGLFD DVHITSNQYN NLNTLFYVGY IVGQFPGHYI MQTFPLGKFV GLVTFSWSVI 180
  181 VFLHCCAYNY GGLIALRFFL GFTESCLLPA MEATMGMFFT HQEQAFLQPV FWISCLSCGI 240
  241 PAGFIAYGLE FVTKSIAPWK LFMIITGGIT FFLSIFLFFY YPDNPSKARF LTDEEKLYTI 300
  301 DRVRKSTRGG IENKIFKKHQ FIEALKDPIT WLFTFAAFTL MLSNNLAYQQ NLIFTSLNVS 360
  361 DLNSTLVGVA LAGYNTVSAI IATFAMYLIP NQSAYHAMFW MLPSITGGIA FVALPWSNRI 420
  421 GELATMIIAS DFGITYIIAL GWTTATSTGY TKKLTRGLMF MVGYAIANII SPQLWQSRDA 480
  481 PRYYPAWIVQ IVVAWFVTPI IYLVARVILA RRNKQRKELK DKKIAEGSLE TIEKTYVDTV 540
  541 DEFGNPVKVL IDNSMLDLTD MENLNFVYPL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.0
Match:	1pw4A
Description:	Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
substrate-specific transmembrane transporter activity	5.46247398538901	bayes_pls_golite062009
ion transmembrane transporter activity	4.58978526526921	bayes_pls_golite062009
transporter activity	4.09176719149278	bayes_pls_golite062009
anion transmembrane transporter activity	3.94605227012838	bayes_pls_golite062009
cation transmembrane transporter activity	3.88180006470231	bayes_pls_golite062009
substrate-specific transporter activity	3.59744164024479	bayes_pls_golite062009
transmembrane transporter activity	3.5865018981083	bayes_pls_golite062009
inorganic anion transmembrane transporter activity	2.52916479889426	bayes_pls_golite062009
organic acid transmembrane transporter activity	2.15783210522667	bayes_pls_golite062009
active transmembrane transporter activity	1.59419818573076	bayes_pls_golite062009
secondary active transmembrane transporter activity	1.22264637452409	bayes_pls_golite062009
binding	1.01584233411372	bayes_pls_golite062009
polyol transmembrane transporter activity	0.924836669821548	bayes_pls_golite062009
alcohol transmembrane transporter activity	0.924836669821548	bayes_pls_golite062009
glycerol transmembrane transporter activity	0.812001619402678	bayes_pls_golite062009
symporter activity	0.74591237387473	bayes_pls_golite062009
solute:cation symporter activity	0.74591237387473	bayes_pls_golite062009
phosphate transmembrane transporter activity	0.312628600969375	bayes_pls_golite062009
cation:sugar symporter activity	0.143419068761182	bayes_pls_golite062009
sugar:hydrogen symporter activity	0.143419068761182	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: