YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC589.09
Organism:	Schizosaccharomyces pombe
Length:	388 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC589.09.

Description	E-value	Query Range	Subject Range
gi\|32413367, gi\|... - gi\|32413367\|ref\|XP_327163.1\| hypothetical protein [Neurospora crassa], gi\|28920627\|gb\|EAA29988.1\| hy... gi\|85092095 - gi\|85092095\|ref\|XP_959224.1\| hypothetical protein [Neurospora crassa OR74A]	304.0	[0..1]	[385..244]
gi\|49084924, gi\|... - gi\|67516407\|ref\|XP_658089.1\| hypothetical protein AN0485.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	290.0	[0..10]	[385..62]
gi\|46127145, gi\|... - gi\|46127145\|ref\|XP_388126.1\| hypothetical protein FG07950.1 [Gibberella zeae PH-1], gi\|42553724\|gb\|E...	289.0	[0..7]	[385..243]
gi\|111059334 - gi\|111059334\|gb\|EAT80454.1\| hypothetical protein SNOG_12042 [Phaeosphaeria nodorum SN15]	278.0	[0..10]	[385..235]
gi\|14486705 - gi\|14486705\|gb\|AAK63247.1\|AF367433_1 phosphatidylinositol transfer-like protein III [Lotus japonicus...	273.0	[0..4]	[369..37]
gi\|92870325 - gi\|92870325\|gb\|ABE79642.1\| Cellular retinaldehyde-binding/triple function, N-terminal [Medicago trun...	271.0	[0..4]	[324..37]
SFH3_ARATH - Phosphatidylinositol/phosphatidylcholine transfer protein SFH3 OS=Arabidopsis thaliana GN=SFH3 PE=2 ...	269.0	[0..10]	[354..28]
SPAC3H8.02 - sec14 cytosolic factor family YAS2_SCHPO - CRAL-TRIO domain-containing protein C3H8.02 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) G...	268.0	[0..19]	[386..66]

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Predicted Domain #1

Region A:
Residues: [1-388]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSRLWVRCR CSTALSAAAA GTFFFRRSQK QPEPETVDEK VSFESYSPLK LMIQKTWPRF  60
   61 QEHKEYRESF IRLAKCDSPD AILVRFLASC NNDSHEASQK LINTLQWRVD TGVERIVERG 120
  121 ELYAKETNDD QFLEQLRTGK VTMLGRDLSD RPICYIQVHL HQPSKLTQNS LREMTVWVME 180
  181 TMRLFLRPQK TLKDSMDSPQ NVNVLFDLSN FSLHNMDYSF VKYLASCLEY YYPQSLGVCI 240
  241 LHKSPWIFRS VWNIIKGWIK PEIAAKIVFT QSANDLEKYI DYSVIPTSLG GGNKKIFQYI 300
  301 EPVEHENDAV IEDSAEKTAA LARYYAYFSE WEQHSLNWAK LDDDDAQNEK VRLCCDAAGT 360
  361 NFANCYWNVD KYIRARTVYD RLKWIGNV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	52.39794
Match:	1auaA
Description:	PHOSPHATIDYLINOSITOL TRANSFER PROTEIN SEC14P FROM SACCHAROMYCES CEREVISIAE
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
phospholipid transporter activity	4.82372291869245	bayes_pls_golite062009
lipid transporter activity	3.44932625048477	bayes_pls_golite062009
phosphatidylinositol transporter activity	3.08477039249457	bayes_pls_golite062009
binding	1.92990311274074	bayes_pls_golite062009
transporter activity	1.52591056865451	bayes_pls_golite062009
substrate-specific transporter activity	0.658164745879483	bayes_pls_golite062009
protein binding	0.592567938703741	bayes_pls_golite062009
transmembrane transporter activity	0.387752763420225	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: