| Protein: | rpn9 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 381 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rpn9.
| Description | E-value | Query Range |
Subject Range |
|
|
365.0 | [0..8] | [380..5] |
|
|
360.0 | [0..8] | [380..5] |
|
|
356.0 | [0..9] | [380..6] |
|
|
356.0 | [0..8] | [380..5] |
|
|
354.0 | [0..8] | [380..5] |
|
|
352.0 | [0..7] | [380..28] |
|
|
349.0 | [0..7] | [380..4] |
|
|
343.0 | [0..7] | [380..4] |
|
|
340.0 | [0..7] | [371..4] |
|
|
339.0 | [0..8] | [381..5] |
|
Region A: Residues: [1-185] |
1 11 21 31 41 51
| | | | | |
1 MDTEMSVNMS DFLHDQATRA PESLQQSYIL MEDLYERKLW KQLTDALIVF FDTPETVPLR 60
61 LPLYTNFVNS FRPNINQLKA VYMGLKAFES CSNDEALRNL NQIVNELDEE KYKDAYVYSI 120
121 VAIARIKLIS GKLDEARELL VKASKIIDHI DYVESLIHSS YYSVSADYYK AKADYAQYYR 180
181 HCLLY
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.930 | N/A | N/A | a.118.13 | Arp2/3 complex 16 kDa subunit ARPC5 |
|
Region A: Residues: [186-263] |
1 11 21 31 41 51
| | | | | |
1 LSCIDLDKCS HTELVERAVD LSVAAILGDI YNFGELLLHP VFELLVGTQH EWLHDLVIAM 60
61 NVGDLPLFER LMGQINKM
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [264-381] |
1 11 21 31 41 51
| | | | | |
1 PLLQSSVALL GQKIRLMALI ELVFQLPPNQ RTLTFDTIAR ATRIPSNEVE LLIMRALSVG 60
61 LITGVIDEVT QIVTISSVQS RILNHSQIAS MESRLREWNQ NIKNLSNVVE ISGKGVFV
|
| Detection Method: | |
| Confidence: | 2.33 |
| Match: | 1ufmA |
| Description: | Solution structure of the PCI domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 3.45730892915196 | bayes_pls_golite062009 |
| binding | 3.37660003833383 | bayes_pls_golite062009 |
| DNA binding | 3.14200456972385 | bayes_pls_golite062009 |
| nucleic acid binding | 3.10521633426493 | bayes_pls_golite062009 |
| transcription factor activity | 2.53044123488453 | bayes_pls_golite062009 |
| hydrolase activity | 2.37143167527915 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.81719906294261 | bayes_pls_golite062009 |
| transcription activator activity | 1.74538136688763 | bayes_pls_golite062009 |
| structural constituent of ribosome | 1.48815906385664 | bayes_pls_golite062009 |
| transcription repressor activity | 0.914435149747979 | bayes_pls_golite062009 |
| protein binding | 0.726445167461826 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.224432853777564 | bayes_pls_golite062009 |
| ubiquitin-protein ligase activity | 0.142921675412538 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 0.124542865343065 | bayes_pls_golite062009 |
