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View Structure Prediction Details

Protein: spn-D-PA
Organism: Drosophila melanogaster
Length: 270 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for spn-D-PA.

Description E-value Query
Range
Subject
Range
gi|395377 - gi|395377|emb|CAA80878.1| RecA-like protein [Schizosaccharomyces pombe]
222.0 [0..2] [270..71]

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Predicted Domain #1
Region A:
Residues: [1-270]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNHRFVRVWE PSQPEAIERR PSVSHENFRI FDKSCWDISQ SASNKILTGK KALDTHFGGG  60
   61 ISLGHLVELI GNSGTGKTQM CLQLCLNVQI PKAAGGLEGS ALFIDTRQDF HPDRLMGLAL 120
  121 KLERQYAHRV PEFKAHKMLQ KIHYVRCPKL DQLMATVLSC HRHLVDHPDI KLIVIDSLAF 180
  181 TLRMLEDGAH RYEMLLELHE SMRRLQRQHE LTWVFTNVLT HRYVKQKFQV EPALGDLHSH 240
  241 LINERIWFSG SSELHLGKSW RTSRLIKESE 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 54.39794
Match: 1v5wA
Description: Crystal structure of the human Dmc1 protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
nucleoside-triphosphatase activity 1.69240737024755 bayes_pls_golite062009
pyrophosphatase activity 1.65296291878002 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides 1.64318297340116 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 1.64169398852165 bayes_pls_golite062009
catalytic activity 1.37148167194523 bayes_pls_golite062009
ATPase activity 1.20060977637766 bayes_pls_golite062009
binding 1.15787013909653 bayes_pls_golite062009
transporter activity 1.14815595550467 bayes_pls_golite062009
ATPase activity, coupled 1.08141765801535 bayes_pls_golite062009
transmembrane transporter activity 1.01232806016411 bayes_pls_golite062009
active transmembrane transporter activity 0.92246823619313 bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity 0.89546790004613 bayes_pls_golite062009
primary active transmembrane transporter activity 0.89065853471483 bayes_pls_golite062009
hydrolase activity 0.875592967682638 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances 0.8668136831732 bayes_pls_golite062009
ATPase activity, coupled to movement of substances 0.86536264587818 bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of substances 0.86511385357843 bayes_pls_golite062009
purine ribonucleotide binding 0.3056113353665 bayes_pls_golite062009
ribonucleotide binding 0.30512981340046 bayes_pls_golite062009
purine nucleotide binding 0.30259037403175 bayes_pls_golite062009
nucleotide binding 0.28998663538132 bayes_pls_golite062009
motor activity 0.19423019377616 bayes_pls_golite062009
microtubule motor activity 0.0959138026858399 bayes_pls_golite062009
helicase activity 0.00674361801283974 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle