YRC Public Data Repository - Protein Structure Prediction

Protein:	PSF3_MOUSE
Organism:	Mus musculus
Length:	216 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PSF3_MOUSE.

Description	E-value	Query Range	Subject Range
GINS3 - GINS complex subunit 3 (Psf3 homolog)	335.0	[0..1]	[216..1]
gi\|55726581 - gi\|55726581\|emb\|CAH90057.1\| hypothetical protein [Pongo abelii] PSF3_PONAB - DNA replication complex GINS protein PSF3 OS=Pongo abelii GN=GINS3 PE=2 SV=1	334.0	[0..1]	[216..1]
gi\|55643959 - gi\|55643959\|ref\|XP_511004.1\| PREDICTED: GINS complex subunit 3 (Psf3 homolog) isoform 2 [Pan troglod...	334.0	[0..1]	[216..1]
CCDS10796.1_1 - null gi\|109128723 - gi\|109128723\|ref\|XP_001101868.1\| PREDICTED: similar to Y65B4BR.8 isoform 2 [Macaca mulatta]	333.0	[0..1]	[216..1]
gi\|149032388, gi... - gi\|27658502\|ref\|XP_226235.1\| PREDICTED: similar to Y65B4BR.8 [Rattus norvegicus], gi\|157817779\|ref\|N...	333.0	[0..1]	[216..1]
PSF3_BOVIN - DNA replication complex GINS protein PSF3 OS=Bos taurus GN=GINS3 PE=2 SV=1	325.0	[0..1]	[216..1]
gi\|73950325 - gi\|73950325\|ref\|XP_544380.2\| PREDICTED: similar to Y65B4BR.8 [Canis familiaris]	325.0	[0..1]	[215..1]
gi\|76779920, gi\|... - gi\|76779920\|gb\|AAI06315.1\| Flj13912 protein [Xenopus laevis], gi\|29365483\|dbj\|BAC66460.1\| Psf3 [Xeno...	300.0	[0..1]	[215..1]
gi\|166796963, gi... - gi\|62859339\|ref\|NP_001016123.1\| hypothetical protein LOC548877 [Xenopus (Silurana) tropicalis], gi\|1...	298.0	[0..1]	[215..1]
gi\|50753449 - gi\|50753449\|ref\|XP_413991.1\| PREDICTED: similar to hypothetical protein FLJ13912 [Gallus gallus]	288.0	[0..1]	[215..778]

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Predicted Domain #1

Region A:
Residues: [1-216]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEAYFPVES GALGPEENFL SLDDILMSQE KLPVRVETPM PRLGAFFLER GAGSEPDHPL  60
   61 PQGTKLELPL WLAKGLFDHK RRILSVELPK MYQEGWRTVF SADANVVDLH KMGPHFYGFG 120
  121 SQLLHFDSPE NADISQSLLK TFIGRFRRIM DSSQNSYNED TSALVARLDE TERGLFQIGQ 180
  181 RSLNDFQSWE KGQASQITAS SLVQNYKKRK FTNMED

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	92.39794
Match:	2e9xC
Description:	No description for 2e9xC was found.

Predicted functions:

Term	Confidence	Notes
3'-5' DNA helicase activity	3.30007058745861	bayes_pls_golite062009
DNA helicase activity	2.7662250039458	bayes_pls_golite062009
binding	1.27082628880017	bayes_pls_golite062009
transcription regulator activity	1.2336233528067	bayes_pls_golite062009
helicase activity	1.2110072302388	bayes_pls_golite062009
protein binding	0.495328779211482	bayes_pls_golite062009
catalytic activity	0.161911144249814	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: