| Protein: | Dscam-PAJ |
| Organism: | Drosophila melanogaster |
| Length: | 2030 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Dscam-PAJ.
| Description | E-value | Query Range |
Subject Range |
|
|
1541.0 | [0..3] | [2030..3] |
|
Region A: Residues: [1-140] |
1 11 21 31 41 51
| | | | | |
1 MNMPNERLKW LMLFAAVALI ACGSQTLAAN PPDADQKGPV FLKEPTNRID FSNSTGAEIE 60
61 CKASGNPMPE IIWIRSDGTA VGDVPGLRQI SSDGKLVFPP FRAEDYRQEV HAQVYACLAR 120
121 NQFGSIISRD VHVRAVVNQF
|
| Detection Method: |  |
| Confidence: | 78.522879 |
| Match: | 2v5sA |
| Description: | No description for 2v5sA was found. |
|
Region A: Residues: [141-251] |
1 11 21 31 41 51
| | | | | |
1 YEAEIMTEYV IRGNAAVLKC SIPSFVADFV RVESWIDDEG NVLSFSDNYD GKYLVLPSGE 60
61 LHIREVGPED GYKSYQCRTK HRLTGETRLS ATKGRLVITE PIGSVSPKIS N
|
| Detection Method: | |
| Confidence: | 4.22 |
| Match: | 2eo9A |
| Description: | No description for 2eo9A was found. |
|
Region A: Residues: [252-526] |
1 11 21 31 41 51
| | | | | |
1 SDDLKHVKVK RLLSLSLLCP AQAYPQPISR WYKFIEGTTR KQAVVLNDRV KQVSGTLIIK 60
61 DAVVEDSGKY LCVVNNSVGG ESVETVLTVT APLSAKIDPP TQTVDFGRPA VFTCQYTGNP 120
121 IKTVSWMKDG KAIGHSEPVL RIESVKKEDK GMYQCFVRND QESAEASAEL KLGGRFDPPV 180
181 IRQAFQEETM EPGPSVFLKC VAGGNPTPEI SWELDGKKIA NNDRYQVGQY VTVNGDVVSY 240
241 LNITSVHAND GGLYKCIAKS KVGVAEHSAK LNVYG
|
| Detection Method: | |
| Confidence: | 19.522879 |
| Match: | 1iraY |
| Description: | Type-1 interleukin-1 receptor |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| telethonin binding | 6.64811984458494 | bayes_pls_golite062009 |
| alpha-actinin binding | 5.77350124471385 | bayes_pls_golite062009 |
| actinin binding | 5.69539760434923 | bayes_pls_golite062009 |
| structural constituent of muscle | 4.93896503565413 | bayes_pls_golite062009 |
| olfactory receptor activity | 4.21057154107121 | bayes_pls_golite062009 |
| antigen binding | 4.06466268219034 | bayes_pls_golite062009 |
| receptor activity | 4.00123250685257 | bayes_pls_golite062009 |
| transmembrane receptor activity | 3.81769911097805 | bayes_pls_golite062009 |
| peptide antigen binding | 3.67780971105726 | bayes_pls_golite062009 |
| binding | 3.17641566810715 | bayes_pls_golite062009 |
| signal transducer activity | 3.10913345555941 | bayes_pls_golite062009 |
| molecular transducer activity | 3.10913345555941 | bayes_pls_golite062009 |
| fibroblast growth factor 1 binding | 2.97046805846847 | bayes_pls_golite062009 |
| IgG binding | 2.62006935586983 | bayes_pls_golite062009 |
| protein binding | 2.22855404705168 | bayes_pls_golite062009 |
| IgE binding | 1.73481096568834 | bayes_pls_golite062009 |
| IgE receptor activity | 1.73481096568834 | bayes_pls_golite062009 |
| receptor binding | 1.70260377709721 | bayes_pls_golite062009 |
| growth factor binding | 1.60826091835429 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 1.58610597245454 | bayes_pls_golite062009 |
| actin binding | 1.42681407553255 | bayes_pls_golite062009 |
| cell adhesion molecule binding | 1.36789541796983 | bayes_pls_golite062009 |
| protein kinase activity | 1.36635494500222 | bayes_pls_golite062009 |
| nucleic acid binding | 1.32330470851159 | bayes_pls_golite062009 |
| fibroblast growth factor binding | 1.27793818082552 | bayes_pls_golite062009 |
| DNA binding | 1.19412627500732 | bayes_pls_golite062009 |
| myosin light chain kinase activity | 1.17845072849922 | bayes_pls_golite062009 |
| transcription regulator activity | 1.16252234499274 | bayes_pls_golite062009 |
| G-protein coupled receptor activity | 1.02428106476324 | bayes_pls_golite062009 |
| phosphotransferase activity, alcohol group as acceptor | 1.02286631988334 | bayes_pls_golite062009 |
| kinase activity | 0.929878054374821 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 0.878595022643164 | bayes_pls_golite062009 |
| protein complex binding | 0.83543827718565 | bayes_pls_golite062009 |
| actin filament binding | 0.760856470721016 | bayes_pls_golite062009 |
| peptide binding | 0.729048089532569 | bayes_pls_golite062009 |
| collagen binding | 0.635057461053063 | bayes_pls_golite062009 |
| cytokine binding | 0.631436442105379 | bayes_pls_golite062009 |
| titin binding | 0.599892148302011 | bayes_pls_golite062009 |
| integrin binding | 0.599569390248921 | bayes_pls_golite062009 |
| structural molecule activity | 0.567620977360967 | bayes_pls_golite062009 |
| protein serine/threonine kinase activity | 0.564762108830441 | bayes_pls_golite062009 |
| transcription factor activity | 0.54549168007511 | bayes_pls_golite062009 |
| IgG receptor activity | 0.50231877534761 | bayes_pls_golite062009 |
| myosin heavy chain binding | 0.49788128784685 | bayes_pls_golite062009 |
| immunoglobulin receptor activity | 0.45286767588665 | bayes_pls_golite062009 |
| transmembrane receptor protein kinase activity | 0.447829399094714 | bayes_pls_golite062009 |
| cytokine receptor activity | 0.34165331857492 | bayes_pls_golite062009 |
| protein tyrosine kinase activity | 0.318890055375093 | bayes_pls_golite062009 |
| transmembrane receptor protein tyrosine kinase activity | 0.28309679787333 | bayes_pls_golite062009 |
| structural constituent of cytoskeleton | 0.0579247757286607 | bayes_pls_golite062009 |
|
Region A: Residues: [527-619] |
1 11 21 31 41 51
| | | | | |
1 LPYIRQMEKK AIVAGETLIV TCPVAGYPID SIVWERDNRA LPINRKQKVF PNGTLIIENV 60
61 ERNSDQATYT CVAKNQEGYS ARGSLEVQVM VLP
|
| Detection Method: | |
| Confidence: | 33.69897 |
| Match: | 2v9qA |
| Description: | No description for 2v9qA was found. |
|
Region A: Residues: [620-712] |
1 11 21 31 41 51
| | | | | |
1 SIHPFSFDAE ANEGDSVQLT CHVAKGDLPL RIRWTHNGLP LFTHLGVMAS KIGERISLLT 60
61 VESVKAANSG NYSCVASNNA GNVSSSAELL VNV
|
| Detection Method: | |
| Confidence: | 30.522879 |
| Match: | 2iepA |
| Description: | No description for 2iepA was found. |
|
Region A: Residues: [713-855] |
1 11 21 31 41 51
| | | | | |
1 PPRWILEPTD KAFAQGSDAK VECKADGFPK PQVTWKKAVG DTPGEYKDLK KSDNIRVEEG 60
61 TLHVDNIQKT NEGYYLCEAI NGIGSGLSAV IMISVQAPPE FTEKLRNQTA RRGEPAVLQC 120
121 EAKGEKPIGI LWNMNNMRLD PKN
|
| Detection Method: | |
| Confidence: | 26.522879 |
| Match: | 1ya5A |
| Description: | Crystal structure of the titin domains z1z2 in complex with telethonin |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [856-1368] |
1 11 21 31 41 51
| | | | | |
1 DNRYTIREEI LSTGVMSSLS IKRTERSDSA LFTCVATNAF GSDDASINMI VQEVPEMPYA 60
61 LKVLDKSGRS VQLSWAQPYD GNSPLDRYII EFKRSRASWS EIDRVIVPGH TTEAQVQKLS 120
121 PATTYNIRIV AENAIGTSQS SEAVTIITAE EAPSGKPQNI KVEPVNQTTM RVTWKPPPRT 180
181 EWNGEILGYY VGYKLSNTNS SYVFETINFI TEEGKEHNLE LQNLRVYTQY SVVIQAFNKI 240
241 GAGPLSEEEK QFTAEGTPSQ PPSDTACTTL TSQTIRVGWV SPPLESANGV IKTYKVVYAP 300
301 SDEWYDETKR HYKKTASSDT VLHGLKKYTN YTMQVLATTA GGDGVRSVPI HCQTEPDVPE 360
361 APTDVKALVM GNAAILVSWR PPAQPNGIIT QYTVYSKAEG AETETKTQKV PHYQMSFEAT 420
421 ELEKNKPYEF WVTASTTIGE GQQSKSIVAM PSDQVPAKIA SFDDTFTATF KEDAKMPCLA 480
481 VGAPQPEITW KIKGVEFSAN DRMRVLPDGS LLI
|
| Detection Method: | |
| Confidence: | 28.0 |
| Match: | 2v5yA |
| Description: | No description for 2v5yA was found. |
|
Region A: Residues: [1369-1594] |
1 11 21 31 41 51
| | | | | |
1 KSVNRQDAGD YSCHAENSIA KDSITHKLIV LAPPQSPHVT LSATTTDALT VKLKPHEGDT 60
61 APLHGYTLHY KPEFGEWETS EVSVDSQKHN IEGLLCGSRY QVYATGFNNI GAGEASDILN 120
121 TRTKGQKPKL PEKPRFIEVS SNSVSLHFKA WKDGGCPMSH FVVESKKRDQ IEWNQISNNV 180
181 KPDNNYVVLD LEPATWYNLR ITAHNSAGFT VAEYDFATLT VTGGTI
|
| Detection Method: | |
| Confidence: | 25.69897 |
| Match: | 1fnfA |
| Description: | FRAGMENT OF HUMAN FIBRONECTIN ENCOMPASSING TYPE-III REPEATS 7 THROUGH 10 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [1595-1839] |
1 11 21 31 41 51
| | | | | |
1 APLDDGSGHG NVHTRIRLPA WMPEWLDLNF MVPLIATVVV VAVGICVVCV ALSRRRADDM 60
61 RGGQKDVYYD VVYNQTMGPG ATLDKRRPDL RDELGYIAPP NRKLPPVPGS NYNTCDRIKR 120
121 GRGGLRSNHS TWDPRRNPNL YEELKAPPVP MHGNHYGHAH GNAECHYRHP GMEDEICPYA 180
181 TFHLLGFREE MDPTKAMNFQ TFPHQNGHAG PVPGHAGTML PPGHPGHVHS RSGSQSMPRA 240
241 NRYQR
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1840-2030] |
1 11 21 31 41 51
| | | | | |
1 KNSQGGQSSI YTPAPEYDDP ANCAEEDQYR RYTRVNSQGG SLYSGPGPEY DDPANCAPEE 60
61 DQYGSQYGGP YGQPYDHYGS RGSMGRRSIG SARNPGNGSP EPPPPPPRNH DMSNSSFNDS 120
121 KESNEISEAE CDRDHGPRGN YGAVKRSPQP KDQRTTEEMR KLIERNETGP KQLQLQQANG 180
181 AGFTAYDTMA V
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
