| Protein: | gi|56203342, gi|... |
| Organism: | Homo sapiens |
| Length: | 339 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|56203342, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
1.0E-97 | [1..339] | [1..339] |
|
|
8.0E-96 | [1..339] | [1..341] |
|
|
2.0E-93 | [1..339] | [1..370] |
|
|
3.0E-93 | [1..339] | [1..370] |
|
|
2.0E-92 | [1..339] | [1..370] |
|
|
2.0E-92 | [1..339] | [1..370] |
|
Region A: Residues: [1-98] |
1 11 21 31 41 51
| | | | | |
1 MAAERQEALR EFVAVTGAEE DRARFFLESA GWDLQIALAS FYEDGGDEDI VTISQATPSS 60
61 VSRGTAPSDN RVTSFRDLIH DQDEDEEEEE GQRFYAGG
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.560 | N/A | N/A | a.77.1 | DEATH domain |
| View | Download | 0.536 | N/A | N/A | a.60.12 | DNA polymerase beta-like, second domain |
| View | Download | 0.527 | N/A | N/A | a.77.1 | DEATH domain |
| View | Download | 0.493 | N/A | N/A | a.60.11 | Hypothetical protein YjbJ |
| View | Download | 0.465 | N/A | N/A | a.77.1 | DEATH domain |
|
Region A: Residues: [99-241] |
1 11 21 31 41 51
| | | | | |
1 SERSGQQIVG PPRKKSPNEL VDDLFKGAKE HGAVAVERVT KSPGETSKPR VHVVLKLWKS 60
61 GFSLDNGELR SYQDPSNAQF LESIRRGEVP AELRRLAHGG QVNLDMEDHR DEDFVKPKGA 120
121 FKAFTGEGQK LGSTAPQVLS TSS
|
| Detection Method: | |
| Confidence: | 21.30103 |
| Match: | 1ss6A |
| Description: | Solution structure of SEP domain from human p47 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [242-339] |
1 11 21 31 41 51
| | | | | |
1 PAQQAENEAK ASSSILIDES EPTTNIQIRL ADGGRLVQKF NHSHRISDIR LFIVDARPAM 60
61 AATSFILMTT FPNKELADES QTLKEANLLN AVIVQRLT
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| Detection Method: | |
| Confidence: | 35.522879 |
| Match: | 1s3sG |
| Description: | Crystal structure of AAA ATPase p97/VCP ND1 in complex with p47 C |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.73741203922834 | bayes_pls_golite062009 |
| protein binding | 1.6357717410164 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 1.16524840930815 | bayes_pls_golite062009 |
| ubiquitin-protein ligase activity | 0.544811416739 | bayes_pls_golite062009 |
| acid-amino acid ligase activity | 0.288560953468985 | bayes_pls_golite062009 |
| hydrolase activity | 0.0740461973842489 | bayes_pls_golite062009 |
