YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: RTS1
Organism: Saccharomyces cerevisiae
Length: 757 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RTS1.

Description E-value Query
Range		 Subject
Range
ENSPTRT00000033615 - null
PPP2R5D - protein phosphatase 2, regulatory subunit B', delta
gi|167774187 - gi|167774187|gb|ABZ92528.1| protein phosphatase 2, regulatory subunit B', delta isoform [synthetic c...
 0.0 [192..748] [18..543]
gi|148691584, gi... - gi|74180345|dbj|BAE32340.1| unnamed protein product [Mus musculus], gi|74141162|dbj|BAE35894.1| unna...
 0.0 [192..748] [18..535]
2A5D_RABIT - Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform OS=Oryctolagus cunic...
 0.0 [192..748] [2..527]
gi|1168144 - gi|1168144|gb|AAB35312.1| SCS1 product [Saccharomyces cerevisiae]
 0.0 [1..757] [1..757]

Back

Predicted Domain #1
Region A:
Residues: [1-282] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMRGFKQRLI KKTTGSSSSS SSKKKDKEKE KEKSSTTSST SKKPASASSS SHGTTHSSAS  60
   61 STGSKSTTEK GKQSGSVPSQ GKHHSSSTSK TKTATTPSSS SSSSRSSSVS RSGSSSTKKT 120
  121 SSRKGQEQSK QSQQPSQSQK QGSSSSSAAI MNPTPVLTVT KDDKSTSGED HAHPTLLGAV 180
  181 SAVPSSPISN ASGTAVSSDV ENGNSNNNNM NINTSNTQDA NHASSQSIDI PRSSHSFERL 240
  241 PTPTKLNPDT DLELIKTPQR HSSSRFEPSR YTPLTKLPNF NE

[Run NCBI BLAST on this sequence.]

Detection Method: ORFEUS
Confidence: 12.27
Match: 1ei3A
Description: Fibrinogen
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [283-374] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VSPEERIPLF IAKVDQCNTM FDFNDPSFDI QGKEIKRSTL DELIEFLVTN RFTYTNEMYA  60
   61 HVVNMFKINL FRPIPPPVNP VGDIYDPDED EP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [375-469] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VNELAWPHMQ AVYEFFLRFV ESPDFNHQIA KQYIDQDFIL KLLELFDSED IRERDCLKTT  60
   61 LHRIYGKFLS LRSFIRRSMN NIFLQFIYET EKFNG

[Run NCBI BLAST on this sequence.]

Detection Method: ORFEUS
Confidence: 8.75
Match: 1b3uA
Description: Constant regulatory domain of protein phosphatase 2a, pr65alpha
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
phosphoprotein phosphatase activity 7.41566231556356 bayes_pls_golite062009
phosphatase activity 6.2815295903206 bayes_pls_golite062009
protein serine/threonine phosphatase activity 6.23975872771765 bayes_pls_golite062009
phosphoric ester hydrolase activity 6.04343158483355 bayes_pls_golite062009
hydrolase activity, acting on ester bonds 5.13001603767079 bayes_pls_golite062009
protein phosphatase type 2A regulator activity 4.9046120881035 bayes_pls_golite062009
phosphatase regulator activity 2.6399267580941 bayes_pls_golite062009
binding 2.6374633159018 bayes_pls_golite062009
protein phosphatase regulator activity 2.60055057218296 bayes_pls_golite062009
hydrolase activity 1.97016752220053 bayes_pls_golite062009
protein binding 1.73688475473996 bayes_pls_golite062009
enzyme regulator activity 0.698613639309592 bayes_pls_golite062009
kinase activity 0.60321289927821 bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor 0.590594379094637 bayes_pls_golite062009
nucleic acid binding 0.549076739943715 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 0.500341303844313 bayes_pls_golite062009
cytoskeletal protein binding 0.410980330975135 bayes_pls_golite062009
transferase activity 0.23030640245878 bayes_pls_golite062009
myosin phosphatase activity 0.0443887387331605 bayes_pls_golite062009
protein kinase activity 0.0343779350724151 bayes_pls_golite062009
nucleoside-triphosphatase regulator activity 0.0332743336452223 bayes_pls_golite062009
GTPase regulator activity 0.0268373969988844 bayes_pls_golite062009
guanyl ribonucleotide binding 0.00234756529236324 bayes_pls_golite062009

Predicted Domain #4
Region A:
Residues: [470-757] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VAELLEILGS IINGFALPLK EEHKVFLVRI LIPLHKVRCL SLYHPQLAYC IVQFLEKDPL  60
   61 LTEEVVMGLL RYWPKINSTK EIMFLNEIED IFEVIEPLEF IKVEVPLFVQ LAKCISSPHF 120
  121 QVAEKVLSYW NNEYFLNLCI ENAEVILPII FPALYELTSQ LELDTANGED SISDPYMLVE 180
  181 QAINSGSWNR AIHAMAFKAL KIFLETNPVL YENCNALYLS SVKETQQRKV QREENWSKLE 240
  241 EYVKNLRINN DKDQYTIKNP ELRNSFNTAS ENNTLNEENE NDCDSEIQ

[Run NCBI BLAST on this sequence.]

Detection Method: ORFEUS
Confidence: 8.75
Match: 1b3uA
Description: Constant regulatory domain of protein phosphatase 2a, pr65alpha
Matching Structure (courtesy of the PDB):
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle