| Protein: | MSS1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 526 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MSS1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..526] | [1..526] |
|
|
0.0 | [31..526] | [10..465] |
|
|
0.0 | [36..526] | [4..454] |
|
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0.0 | [36..526] | [4..454] |
|
|
0.0 | [35..526] | [1..452] |
|
|
0.0 | [36..526] | [4..454] |
|
|
0.0 | [36..526] | [4..454] |
|
|
0.0 | [19..526] | [18..492] |
|
|
0.0 | [36..526] | [4..454] |
|
Region A: Residues: [1-87] |
1 11 21 31 41 51
| | | | | |
1 MNSASFLQSR LISRSFLVRR SLKRYSGLAK PYTFQQPTIY ALSTPANQTS AIAIIRISGT 60
61 HAKYIYNRLV DSSTVPPIRK AILRNIY
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.900 | 0.326 | GTP binding | d.58.12 | eEF-1beta-like |
| View | Download | 0.917 | 0.004 | mitochondrial inner membrane | d.58.5 | GlnB-like |
| View | Download | 0.772 | 0.001 | mitochondrial inner membrane | d.58.18 | Regulatory domain in the aminoacid metabolism |
| View | Download | 0.743 | N/A | N/A | d.214.1 | Hypothetical protein MTH1880 |
| View | Download | 0.726 | N/A | N/A | d.58.5 | GlnB-like |
| View | Download | 0.666 | N/A | N/A | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.660 | N/A | N/A | d.58.43 | Mechanosensitive channel protein MscS (YggB), C-terminal domain |
| View | Download | 0.658 | N/A | N/A | d.58.14 | Ribosomal protein S6 |
| View | Download | 0.647 | N/A | N/A | d.58.2 | Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain |
| View | Download | 0.633 | N/A | N/A | b.1.1 | Immunoglobulin |
| View | Download | 0.623 | N/A | N/A | d.58.12 | eEF-1beta-like |
| View | Download | 0.600 | N/A | N/A | d.58.44 | Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains |
| View | Download | 0.596 | N/A | N/A | d.58.12 | eEF-1beta-like |
| View | Download | 0.572 | N/A | N/A | d.214.1 | Hypothetical protein MTH1880 |
| View | Download | 0.565 | N/A | N/A | d.58.12 | eEF-1beta-like |
| View | Download | 0.522 | N/A | N/A | d.52.1 | Alpha-lytic protease prodomain |
| View | Download | 0.502 | N/A | N/A | d.89.1 | Origin of replication-binding domain, RBD-like |
| View | Download | 0.499 | N/A | N/A | d.16.1 | FAD-linked reductases, C-terminal domain |
| View | Download | 0.489 | N/A | N/A | d.58.12 | eEF-1beta-like |
| View | Download | 0.464 | N/A | N/A | d.58.12 | eEF-1beta-like |
| View | Download | 0.462 | N/A | N/A | b.1.1 | Immunoglobulin |
| View | Download | 0.449 | N/A | N/A | b.84.1 | Single hybrid motif |
| View | Download | 0.448 | N/A | N/A | d.52.1 | Alpha-lytic protease prodomain |
| View | Download | 0.435 | N/A | N/A | d.58.8 | Viral DNA-binding domain |
| View | Download | 0.420 | N/A | N/A | d.58.12 | eEF-1beta-like |
| View | Download | 0.408 | N/A | N/A | d.74.3 | RBP11-like subunits of RNA polymerase |
| View | Download | 0.404 | N/A | N/A | d.58.18 | Regulatory domain in the aminoacid metabolism |
| View | Download | 0.403 | N/A | N/A | d.58.13 | Anticodon-binding domain of PheRS |
| View | Download | 0.401 | N/A | N/A | d.51.1 | Eukaryotic type KH-domain (KH-domain type I) |
| View | Download | 0.400 | N/A | N/A | d.130.1 | S-adenosylmethionine synthetase |
| View | Download | 0.397 | N/A | N/A | d.16.1 | FAD-linked reductases, C-terminal domain |
| View | Download | 0.397 | N/A | N/A | d.52.7 | Ribosome-binding factor A, RbfA |
| View | Download | 0.386 | N/A | N/A | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.383 | N/A | N/A | f.14.1 | Voltage-gated potassium channels |
| View | Download | 0.381 | N/A | N/A | d.88.1 | SRF-like |
| View | Download | 0.375 | N/A | N/A | d.51.1 | Eukaryotic type KH-domain (KH-domain type I) |
| View | Download | 0.372 | N/A | N/A | d.57.1 | DNA damage-inducible protein DinI |
| View | Download | 0.370 | N/A | N/A | d.58.17 | Metal-binding domain |
| View | Download | 0.370 | N/A | N/A | d.16.1 | FAD-linked reductases, C-terminal domain |
| View | Download | 0.368 | N/A | N/A | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.366 | N/A | N/A | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.365 | N/A | N/A | d.53.1 | Ribosomal protein S3 C-terminal domain |
| View | Download | 0.350 | N/A | N/A | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.347 | N/A | N/A | d.15.6 | Superantigen toxins, C-terminal domain |
| View | Download | 0.342 | N/A | N/A | d.58.17 | Metal-binding domain |
| View | Download | 0.332 | N/A | N/A | d.52.1 | Alpha-lytic protease prodomain |
| View | Download | 0.319 | N/A | N/A | b.84.2 | Rudiment single hybrid motif |
| View | Download | 0.315 | N/A | N/A | d.58.23 | Probable ACP-binding domain of malonyl-CoA ACP transacylase |
| View | Download | 0.315 | N/A | N/A | d.58.42 | N-utilization substance G protein NusG, N-terminal domain |
| View | Download | 0.314 | N/A | N/A | c.97.1 | Cytidine deaminase-like |
| View | Download | 0.311 | N/A | N/A | d.58.8 | Viral DNA-binding domain |
| View | Download | 0.310 | N/A | N/A | d.58.8 | Viral DNA-binding domain |
| View | Download | 0.308 | N/A | N/A | d.58.10 | Acylphosphatase-like |
| View | Download | 0.307 | N/A | N/A | d.58.8 | Viral DNA-binding domain |
| View | Download | 0.306 | N/A | N/A | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.305 | N/A | N/A | d.52.4 | YhbC-like, N-terminal domain |
| View | Download | 0.301 | N/A | N/A | d.214.1 | Hypothetical protein MTH1880 |
| View | Download | 0.300 | N/A | N/A | d.201.1 | SRP19 |
| View | Download | 0.294 | N/A | N/A | d.58.14 | Ribosomal protein S6 |
| View | Download | 0.294 | N/A | N/A | d.58.17 | Metal-binding domain |
| View | Download | 0.288 | N/A | N/A | d.74.3 | RBP11-like subunits of RNA polymerase |
| View | Download | 0.287 | N/A | N/A | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.287 | N/A | N/A | d.15.6 | Superantigen toxins, C-terminal domain |
| View | Download | 0.287 | N/A | N/A | d.15.6 | Superantigen toxins, C-terminal domain |
| View | Download | 0.281 | N/A | N/A | d.58.3 | Protease propeptides/inhibitors |
| View | Download | 0.280 | N/A | N/A | d.58.43 | Mechanosensitive channel protein MscS (YggB), C-terminal domain |
| View | Download | 0.279 | N/A | N/A | d.89.1 | Origin of replication-binding domain, RBD-like |
| View | Download | 0.271 | N/A | N/A | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.269 | N/A | N/A | d.58.44 | Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains |
| View | Download | 0.267 | N/A | N/A | d.129.1 | TATA-box binding protein-like |
| View | Download | 0.261 | N/A | N/A | d.214.1 | Hypothetical protein MTH1880 |
| View | Download | 0.258 | N/A | N/A | d.51.1 | Eukaryotic type KH-domain (KH-domain type I) |
| View | Download | 0.253 | N/A | N/A | b.107.1 | Urease metallochaperone UreE, N-terminal domain |
| View | Download | 0.252 | N/A | N/A | d.58.18 | Regulatory domain in the aminoacid metabolism |
| View | Download | 0.251 | N/A | N/A | d.58.44 | Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains |
| View | Download | 0.248 | N/A | N/A | d.58.12 | eEF-1beta-like |
| View | Download | 0.248 | N/A | N/A | d.58.20 | NAD-binding domain of HMG-CoA reductase |
| View | Download | 0.246 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.245 | N/A | N/A | d.16.1 | FAD-linked reductases, C-terminal domain |
| View | Download | 0.243 | N/A | N/A | d.52.4 | YhbC-like, N-terminal domain |
| View | Download | 0.238 | N/A | N/A | c.51.1 | Anticodon-binding domain of Class II aaRS |
| View | Download | 0.237 | N/A | N/A | d.58.9 | RuBisCO, large subunit, small (N-terminal) domain |
| View | Download | 0.234 | N/A | N/A | g.18.1 | Complement control module/SCR domain |
| View | Download | 0.227 | N/A | N/A | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
| View | Download | 0.224 | N/A | N/A | d.58.5 | GlnB-like |
| View | Download | 0.224 | N/A | N/A | d.58.5 | GlnB-like |
| View | Download | 0.221 | N/A | N/A | d.58.44 | Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains |
| View | Download | 0.220 | N/A | N/A | d.58.43 | Mechanosensitive channel protein MscS (YggB), C-terminal domain |
| View | Download | 0.219 | N/A | N/A | d.16.1 | FAD-linked reductases, C-terminal domain |
| View | Download | 0.217 | N/A | N/A | d.58.18 | Regulatory domain in the aminoacid metabolism |
| View | Download | 0.215 | N/A | N/A | d.71.1 | Cell division protein MinE topological specificity domain |
| View | Download | 0.215 | N/A | N/A | d.58.12 | eEF-1beta-like |
| View | Download | 0.214 | N/A | N/A | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.214 | N/A | N/A | d.122.1 | ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |
| View | Download | 0.212 | N/A | N/A | d.130.1 | S-adenosylmethionine synthetase |
| View | Download | 0.212 | N/A | N/A | d.58.44 | Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains |
| View | Download | 0.208 | N/A | N/A | d.105.1 | Clathrin adaptor appendage, alpha and beta chain-specific domain |
| View | Download | 0.208 | N/A | N/A | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.208 | N/A | N/A | b.1.1 | Immunoglobulin |
| View | Download | 0.206 | N/A | N/A | d.58.43 | Mechanosensitive channel protein MscS (YggB), C-terminal domain |
| View | Download | 0.204 | N/A | N/A | d.52.4 | YhbC-like, N-terminal domain |
| View | Download | 0.204 | N/A | N/A | d.58.17 | Metal-binding domain |
| View | Download | 0.204 | N/A | N/A | d.130.1 | S-adenosylmethionine synthetase |
| View | Download | 0.203 | N/A | N/A | b.40.4 | Nucleic acid-binding proteins |
| View | Download | 0.201 | N/A | N/A | d.58.36 | Sulfite reductase, domains 1 and 3 |
| View | Download | 0.200 | N/A | N/A | d.15.6 | Superantigen toxins, C-terminal domain |
| Term | Confidence | Notes |
| methyltransferase activity | 3.28983380541263 | bayes_pls_golite062009 |
| transferase activity, transferring one-carbon groups | 3.20782575104451 | bayes_pls_golite062009 |
| catalytic activity | 1.65079399897053 | bayes_pls_golite062009 |
| transferase activity | 1.3676947912529 | bayes_pls_golite062009 |
| coenzyme binding | 1.08379167900905 | bayes_pls_golite062009 |
| nucleic acid binding | 0.913322399315129 | bayes_pls_golite062009 |
| structural constituent of ribosome | 0.738234102557832 | bayes_pls_golite062009 |
| RNA helicase activity | 0.73539642422624 | bayes_pls_golite062009 |
| RNA-dependent ATPase activity | 0.70759024918936 | bayes_pls_golite062009 |
| ATP-dependent RNA helicase activity | 0.68122080550778 | bayes_pls_golite062009 |
| ATP binding | 0.60527666756293 | bayes_pls_golite062009 |
| binding | 0.604868700215668 | bayes_pls_golite062009 |
| aminomethyltransferase activity | 0.573831999310668 | bayes_pls_golite062009 |
| adenyl ribonucleotide binding | 0.573214556107072 | bayes_pls_golite062009 |
| ligase activity | 0.417681194526243 | bayes_pls_golite062009 |
| transcription regulator activity | 0.390949264169589 | bayes_pls_golite062009 |
| DNA binding | 0.376487324624615 | bayes_pls_golite062009 |
| translation regulator activity | 0.29096092258568 | bayes_pls_golite062009 |
| translation factor activity, nucleic acid binding | 0.274994961137851 | bayes_pls_golite062009 |
| structural molecule activity | 0.0558641287316701 | bayes_pls_golite062009 |
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Region A: Residues: [88-264] |
1 11 21 31 41 51
| | | | | |
1 SPSSCSVKPH DQKESKILLD TSLLLYFQAP YSFTGEDVLE LHVHGGKAVV NSILKAIGSL 60
61 HDRSSGKDIR FALPGDFSRR AFQNGKFDLT QLEGIKDLID SETESQRRSA LSSFNGDNKI 120
121 LFENWRETII ENMAQLTAII DFADDNSQEI QNTDEIFHNV EKNIICLRDQ IVTFMQK
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [265-526] |
1 11 21 31 41 51
| | | | | |
1 VEKSTILQNG IKLVLLGAPN VGKSSLVNSL TNDDISIVSD IPGTTRDSID AMINVNGYKV 60
61 IICDTAGIRE KSSDKIEMLG IDRAKKKSVQ SDLCLFIVDP TDLSKLLPED ILAHLSSKTF 120
121 GNKRIIIVVN KSDLVSDDEM TKVLNKLQTR LGSKYPILSV SCKTKEGIES LISTLTSNFE 180
181 SLSQSSADAS PVIVSKRVSE ILKNDVLYGL EEFFKSKDFH NDIVLATENL RYASDGIAKI 240
241 TGQAIGIEEI LDSVFSKFCI GK
|
| Detection Method: | |
| Confidence: | 125.9794 |
| Match: | 1egaA_ |
| Description: | GTPase Era, N-terminal domain; GTPase Era C-terminal domain |
Matching Structure (courtesy of the PDB): |
|
