| Protein: | RFA3 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 122 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RFA3.
| Description | E-value | Query Range |
Subject Range |
|
|
8.0E-69 | [1..122] | [1..122] |
|
Region A: Residues: [1-122] |
1 11 21 31 41 51
| | | | | |
1 MASETPRVDP TEISNVNAPV FRIIAQIKSQ PTESQLILQS PTISSKNGSE VEMITLNNIR 60
61 VSMNKTFEID SWYEFVCRNN DDGELGFLIL DAVLCKFKEN EDLSLNGVVA LQRLCKKYPE 120
121 IY
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.491 | c.47.1 | Thioredoxin-like |
| View | Download | 0.386 | b.60.1 | Lipocalins |
| View | Download | 0.348 | c.23.1 | CheY-like |
| View | Download | 0.512 | c.59.1 | MurD-like peptide ligases, peptide-binding domain |
| View | Download | 0.372 | a.121.1 | Tetracyclin repressor-like, C-terminal domain |
| View | Download | 0.330 | c.52.1 | Restriction endonuclease-like |
| View | Download | 0.328 | c.84.1 | Phosphoglucomutase, first 3 domains |
| View | Download | 0.327 | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.321 | a.79.1 | Antitermination factor NusB |
| View | Download | 0.315 | c.36.1 | Thiamin diphosphate-binding fold (THDP-binding) |
| View | Download | 0.312 | c.52.1 | Restriction endonuclease-like |
| View | Download | 0.311 | c.55.1 | Actin-like ATPase domain |
| View | Download | 0.290 | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.261 | d.112.1 | Phoshotransferase/anion transport protein |
| View | Download | 0.261 | b.71.1 | Glycosyl hydrolase domain |
| View | Download | 0.249 | c.57.1 | Molybdenum cofactor biosynthesis proteins |
| View | Download | 0.247 | c.37.1 | P-loop containing nucleoside triphosphate hydrolases |
| View | Download | 0.229 | d.58.39 | Glutamyl tRNA-reductase catalytic, N-terminal domain |
| View | Download | 0.219 | c.53.1 | Resolvase-like |
| View | Download | 0.205 | c.48.1 | TK C-terminal domain-like |
| Term | Confidence | Notes |
| telomeric DNA binding | 6.80354805962079 | bayes_pls_golite062009 |
| single-stranded telomeric DNA binding | 5.68297908219419 | bayes_pls_golite062009 |
| telomerase inhibitor activity | 5.1433503909639 | bayes_pls_golite062009 |
| structure-specific DNA binding | 3.21942642139833 | bayes_pls_golite062009 |
| single-stranded DNA binding | 3.2177041772475 | bayes_pls_golite062009 |
| nucleic acid binding | 3.06958664528424 | bayes_pls_golite062009 |
| binding | 2.55343783977289 | bayes_pls_golite062009 |
| DNA binding | 2.39520356118846 | bayes_pls_golite062009 |
| structural constituent of ribosome | 2.05553707774342 | bayes_pls_golite062009 |
| structural molecule activity | 1.91392288234828 | bayes_pls_golite062009 |
| DNA helicase activity | 1.03434608237928 | bayes_pls_golite062009 |
| transcription regulator activity | 0.786603442061911 | bayes_pls_golite062009 |
| DNA-dependent ATPase activity | 0.633347054314125 | bayes_pls_golite062009 |
| translation regulator activity | 0.370723767971907 | bayes_pls_golite062009 |
| nuclease activity | 0.344602655860014 | bayes_pls_golite062009 |
| ribonuclease activity | 0.327087435405429 | bayes_pls_golite062009 |
| double-stranded DNA binding | 0.326586310136168 | bayes_pls_golite062009 |
| translation factor activity, nucleic acid binding | 0.322367891458082 | bayes_pls_golite062009 |
| nucleotidyltransferase activity | 0.285831998808043 | bayes_pls_golite062009 |
| DEAD/H-box RNA helicase binding | 0.234313553803999 | bayes_pls_golite062009 |
| four-way junction helicase activity | 0.149878585899218 | bayes_pls_golite062009 |
| exonuclease activity | 0.123437412322173 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.112654475341878 | bayes_pls_golite062009 |
| protein binding | 0.0856707433885143 | bayes_pls_golite062009 |
| transcription factor activity | 0.0739391344707232 | bayes_pls_golite062009 |
| translation initiation factor activity | 0.0214826254708589 | bayes_pls_golite062009 |
