| Protein: | SWI5 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 709 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SWI5.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [93..708] | [36..708] |
|
|
0.0 | [166..708] | [5..604] |
|
|
0.0 | [136..708] | [222..830] |
|
Region A: Residues: [1-74] |
1 11 21 31 41 51
| | | | | |
1 MDTSNSWFDA SKVQSLNFDL QTNSYYSNAR GSDPSSYAIE GEYKTLATDD LGNILNLNYG 60
61 ETNEVIMNEI NDLN
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.858 | 0.007 | regulation of transcription involved in G1 phase of mitotic cell cycle | d.95.1 | Glucose permease domain IIB |
|
Region A: Residues: [75-182] |
1 11 21 31 41 51
| | | | | |
1 LPLGPLSDEK SVKVSTFSEL IGNDWQSMNF DLENNSREVT LNATSLLNEN RLNQDSGMTV 60
61 YQKTMSDKPH DEKKISMADN LLSTINKSEI NKGFDRNLGE LLLQQQQE
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [183-298] |
1 11 21 31 41 51
| | | | | |
1 LREQLRAQQE ANKKLELELK QTQYKQQQLQ ATLENSDGPQ FLSPKRKISP ASENVEDVYA 60
61 NSLSPMISPP MSNTSFTGSP SRRNNRQKYC LQRKNSSGTV GPLCFQELNE GFNDSL
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
| Term | Confidence | Notes |
| nucleic acid binding | 2.36376512665406 | bayes_pls_golite062009 |
| DNA binding | 2.2458683155586 | bayes_pls_golite062009 |
| binding | 2.05464920186799 | bayes_pls_golite062009 |
| protein binding | 0.476896736636797 | bayes_pls_golite062009 |
|
Region A: Residues: [299-359] |
1 11 21 31 41 51
| | | | | |
1 ISPKKIRSNP NENLSSKTKF ITPFTPKSRV SSATSNSANI TPNNLRLDFK INVEDQESEY 60
61 S
|
| Detection Method: | |
| Confidence: | 3.69897 |
| Match: | 1bbo__ |
| Description: | Enhancer binding protein |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [360-477] |
1 11 21 31 41 51
| | | | | |
1 EKPLGLGIEL LGKPGPSPTK SVSLKSASVD IMPTIPGSVN NTPSVNKVSL SSSYIDQYTP 60
61 RGKQLHFSSI SENALGINAA TPHLKPPSQQ ARHREGVFND LDPNVLTKNT DNEGDDNE
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [478-584] |
1 11 21 31 41 51
| | | | | |
1 ENEPESRFVI SETPSPVLKS QSKYEGRSPQ FGTHIKEINT YTTNSPSKIT RKLTTLPRGS 60
61 IDKYVKEMPD KTFECLFPGC TKTFKRRYNI RSHIQTHLED RPYSCDH
|
| Detection Method: | |
| Confidence: | 126.228787 |
| Match: | 2gliA_ |
| Description: | Five-finger GLI1 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [585-709] |
1 11 21 31 41 51
| | | | | |
1 PGCDKAFVRN HDLIRHKKSH QEKAYACPCG KKFNREDALV VHRSRMICSG GKKYENVVIK 60
61 RSPRKRGRPR KDGTSSVSSS PIKENINKDH NGQLMFKLED QLRRERSYDG NGTGIMVSPM 120
121 KTNQR
|
| Detection Method: | |
| Confidence: | 117.39794 |
| Match: | 1meyG_ |
| Description: | Designed zinc finger protein |
Matching Structure (courtesy of the PDB): |
|
