| Protein: | SWI5 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 709 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SWI5.
| Description | E-value | Query Range |
Subject Range |
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|
0.0 | [93..708] | [36..708] |
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0.0 | [166..708] | [5..604] |
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0.0 | [136..708] | [222..830] |
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Region A: Residues: [1-74] |
1 11 21 31 41 51
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1 MDTSNSWFDA SKVQSLNFDL QTNSYYSNAR GSDPSSYAIE GEYKTLATDD LGNILNLNYG 60
61 ETNEVIMNEI NDLN
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| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
|
Region A: Residues: [75-182] |
1 11 21 31 41 51
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1 LPLGPLSDEK SVKVSTFSEL IGNDWQSMNF DLENNSREVT LNATSLLNEN RLNQDSGMTV 60
61 YQKTMSDKPH DEKKISMADN LLSTINKSEI NKGFDRNLGE LLLQQQQE
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.626 | 0.462 | regulation of transcription involved in G1 phase of mitotic cell cycle | a.1.1 | Globin-like |
| View | Download | 0.489 | 0.046 | regulation of transcription involved in G1 phase of mitotic cell cycle | a.24.3 | Cytochromes |
| View | Download | 0.723 | 0.023 | regulation of transcription involved in G1 phase of mitotic cell cycle | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.603 | 0.013 | regulation of transcription involved in G1 phase of mitotic cell cycle | a.118.14 | FliG |
| View | Download | 0.723 | N/A | N/A | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.626 | N/A | N/A | a.1.1 | Globin-like |
| View | Download | 0.603 | N/A | N/A | a.118.14 | FliG |
| View | Download | 0.518 | N/A | N/A | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.518 | N/A | N/A | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.489 | N/A | N/A | a.24.3 | Cytochromes |
| View | Download | 0.474 | N/A | N/A | c.78.2 | Aspartate/glutamate racemase |
| View | Download | 0.406 | N/A | N/A | a.77.1 | DEATH domain |
| View | Download | 0.406 | N/A | N/A | a.77.1 | DEATH domain |
| View | Download | 0.397 | N/A | N/A | a.118.1 | ARM repeat |
| View | Download | 0.383 | N/A | N/A | a.39.2 | Insect pheromon/odorant-binding proteins |
| View | Download | 0.373 | N/A | N/A | d.109.1 | Actin depolymerizing proteins |
| View | Download | 0.369 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.367 | N/A | N/A | a.4.1 | Homeodomain-like |
| View | Download | 0.350 | N/A | N/A | a.39.1 | EF-hand |
| View | Download | 0.348 | N/A | N/A | a.66.1 | Transducin (alpha subunit), insertion domain |
| View | Download | 0.348 | N/A | N/A | a.181.1 | Antibiotic binding domain of TipA-like multidrug resistance regulators |
| View | Download | 0.343 | N/A | N/A | a.39.2 | Insect pheromon/odorant-binding proteins |
| View | Download | 0.335 | N/A | N/A | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.333 | N/A | N/A | a.85.1 | Hemocyanin, N-terminal domain |
| View | Download | 0.295 | N/A | N/A | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.294 | N/A | N/A | d.234.1 | Proguanylin |
| View | Download | 0.287 | N/A | N/A | a.1.1 | Globin-like |
| View | Download | 0.286 | N/A | N/A | d.218.1 | Nucleotidyltransferase |
| View | Download | 0.284 | N/A | N/A | a.60.5 | Barrier-to-autointegration factor, BAF |
| View | Download | 0.275 | N/A | N/A | c.26.2 | Adenine nucleotide alpha hydrolases-like |
| View | Download | 0.264 | N/A | N/A | a.121.1 | Tetracyclin repressor-like, C-terminal domain |
| View | Download | 0.252 | N/A | N/A | a.8.3 | Families 57/38 glycoside transferase middle domain |
| View | Download | 0.241 | N/A | N/A | a.77.1 | DEATH domain |
| View | Download | 0.238 | N/A | N/A | d.32.1 | Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |
| View | Download | 0.234 | N/A | N/A | d.15.1 | Ubiquitin-like |
| View | Download | 0.234 | N/A | N/A | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.224 | N/A | N/A | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.224 | N/A | N/A | c.37.1 | P-loop containing nucleoside triphosphate hydrolases |
| View | Download | 0.217 | N/A | N/A | a.1.1 | Globin-like |
| View | Download | 0.215 | N/A | N/A | a.64.1 | Saposin |
| View | Download | 0.211 | N/A | N/A | a.118.9 | ENTH/VHS domain |
| View | Download | 0.209 | N/A | N/A | d.2.1 | Lysozyme-like |
| View | Download | 0.208 | N/A | N/A | d.15.1 | Ubiquitin-like |
| View | Download | 0.201 | N/A | N/A | d.58.49 | YajQ-like |
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Region A: Residues: [183-298] |
1 11 21 31 41 51
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1 LREQLRAQQE ANKKLELELK QTQYKQQQLQ ATLENSDGPQ FLSPKRKISP ASENVEDVYA 60
61 NSLSPMISPP MSNTSFTGSP SRRNNRQKYC LQRKNSSGTV GPLCFQELNE GFNDSL
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| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
| Term | Confidence | Notes |
| nucleic acid binding | 2.36376512665406 | bayes_pls_golite062009 |
| DNA binding | 2.2458683155586 | bayes_pls_golite062009 |
| binding | 2.05464920186799 | bayes_pls_golite062009 |
| protein binding | 0.476896736636797 | bayes_pls_golite062009 |
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Region A: Residues: [299-359] |
1 11 21 31 41 51
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1 ISPKKIRSNP NENLSSKTKF ITPFTPKSRV SSATSNSANI TPNNLRLDFK INVEDQESEY 60
61 S
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| Detection Method: | |
| Confidence: | 3.69897 |
| Match: | 1bbo__ |
| Description: | Enhancer binding protein |
Matching Structure (courtesy of the PDB): |
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Region A: Residues: [360-477] |
1 11 21 31 41 51
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1 EKPLGLGIEL LGKPGPSPTK SVSLKSASVD IMPTIPGSVN NTPSVNKVSL SSSYIDQYTP 60
61 RGKQLHFSSI SENALGINAA TPHLKPPSQQ ARHREGVFND LDPNVLTKNT DNEGDDNE
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.416 | 0.472 | regulation of transcription involved in G1 phase of mitotic cell cycle | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.436 | 0.119 | regulation of transcription involved in G1 phase of mitotic cell cycle | c.61.1 | PRTase-like |
| View | Download | 0.430 | 0.039 | regulation of transcription involved in G1 phase of mitotic cell cycle | d.95.2 | Homing endonucleases |
| View | Download | 0.394 | 0.031 | regulation of transcription involved in G1 phase of mitotic cell cycle | d.198.1 | Type III secretory system chaperone |
| View | Download | 0.436 | N/A | N/A | c.61.1 | PRTase-like |
| View | Download | 0.430 | N/A | N/A | d.95.2 | Homing endonucleases |
| View | Download | 0.416 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.394 | N/A | N/A | d.198.1 | Type III secretory system chaperone |
| View | Download | 0.345 | N/A | N/A | d.95.2 | Homing endonucleases |
| View | Download | 0.345 | N/A | N/A | d.95.2 | Homing endonucleases |
| View | Download | 0.321 | N/A | N/A | d.58.4 | Dimeric alpha+beta barrel |
| View | Download | 0.319 | N/A | N/A | d.95.2 | Homing endonucleases |
| View | Download | 0.311 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.290 | N/A | N/A | b.60.1 | Lipocalins |
| View | Download | 0.270 | N/A | N/A | a.36.1 | Signal peptide-binding domain |
| View | Download | 0.268 | N/A | N/A | d.198.1 | Type III secretory system chaperone |
| View | Download | 0.259 | N/A | N/A | a.118.1 | ARM repeat |
| View | Download | 0.254 | N/A | N/A | a.6.1 | Putative DNA-binding domain |
| View | Download | 0.243 | N/A | N/A | d.34.1 | DNA-binding domain of Mlu1-box binding protein MBP1 |
| View | Download | 0.236 | N/A | N/A | c.10.2 | L domain-like |
| View | Download | 0.217 | N/A | N/A | a.6.1 | Putative DNA-binding domain |
| View | Download | 0.213 | N/A | N/A | d.74.1 | Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) |
| View | Download | 0.213 | N/A | N/A | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.210 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.208 | N/A | N/A | a.39.1 | EF-hand |
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Region A: Residues: [478-584] |
1 11 21 31 41 51
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1 ENEPESRFVI SETPSPVLKS QSKYEGRSPQ FGTHIKEINT YTTNSPSKIT RKLTTLPRGS 60
61 IDKYVKEMPD KTFECLFPGC TKTFKRRYNI RSHIQTHLED RPYSCDH
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| Detection Method: | |
| Confidence: | 126.228787 |
| Match: | 2gliA_ |
| Description: | Five-finger GLI1 |
Matching Structure (courtesy of the PDB): |
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Region A: Residues: [585-709] |
1 11 21 31 41 51
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1 PGCDKAFVRN HDLIRHKKSH QEKAYACPCG KKFNREDALV VHRSRMICSG GKKYENVVIK 60
61 RSPRKRGRPR KDGTSSVSSS PIKENINKDH NGQLMFKLED QLRRERSYDG NGTGIMVSPM 120
121 KTNQR
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| Detection Method: | |
| Confidence: | 117.39794 |
| Match: | 1meyG_ |
| Description: | Designed zinc finger protein |
Matching Structure (courtesy of the PDB): |
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