| Protein: | RBS1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 457 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RBS1.
| Description | E-value | Query Range |
Subject Range |
|
|
240.0 | [0..4] | [457..35] |
|
Region A: Residues: [1-158] |
1 11 21 31 41 51
| | | | | |
1 MTALDSRNWG LTPAMETGLF QKPQDRIFII ELENSIVSFI NSNTESFQLR PMNSYYRLLS 60
61 HQIAEYHNLN HVLARTQDSC VILFKGENFQ KIEGKPLLQE LQLNKKPEEC ASSSESIEKS 120
121 NNNRIFRILK RKEVGNECDY KIDGNTRTPN SNLTANSN
|
| Detection Method: |  |
| Confidence: | 36.69897 |
| Match: | 1whrA |
| Description: | Solution structure of the R3H domain from human hypothetical protein BAA76846 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.869425210311959 | bayes_pls_golite062009 |
| nucleic acid binding | 0.82872525437777 | bayes_pls_golite062009 |
| DNA binding | 0.596936601153488 | bayes_pls_golite062009 |
| protein binding | 0.520340792676972 | bayes_pls_golite062009 |
| transcription regulator activity | 0.371435369600675 | bayes_pls_golite062009 |
| catalytic activity | 0.295853503406924 | bayes_pls_golite062009 |
|
Region A: Residues: [159-277] |
1 11 21 31 41 51
| | | | | |
1 KDQKIEIDDK SSTDLEQERI EKERLYEQRK QEIFDKLNKS EDDVKSTNSS GSSDSDNEWS 60
61 DWLNGDDSNT QTSNGSVSSS SPFNSSVTTI QVNKPQQQFY DSRRGRGGRR RGTNNYKDA
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [278-457] |
1 11 21 31 41 51
| | | | | |
1 YRGQSRRNKE NGGYQSGYSS PYLVYPPPQM GGNSLPTYPL MYNPAGPAPG PAPSPMVMGN 60
61 NTVFMNPYMY NMNPQGSCSF GTPIPMYPPY QYQYQYQYNT QYHSGPYSNT PSYNSNNYTR 120
121 SSANKYHHFQ GKNSYSGAIP KRSDDSNSNK NEGIRRASVE GSPSSRDTDS VEMKFDKLNI 180
181
|
| Detection Method: | |
| Confidence: | 3.09691 |
| Match: | 1m2vB |
| Description: | Sec24 |
Matching Structure (courtesy of the PDB): |
|
