YRC Public Data Repository - Protein Structure Prediction

Protein:	SLD5_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	214 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SLD5_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|76655942 - gi\|76655942\|ref\|XP_874005.1\| PREDICTED: similar to SLD5 [Bos taurus]	260.0	[0..2]	[214..279]
gi\|39951937, gi\|... - gi\|39951937\|ref\|XP_363685.1\| hypothetical protein MGG_01611 [Magnaporthe grisea 70-15], gb\|EAA55960....	253.0	[0..7]	[214..11]
gi\|85114431 - gi\|85114431\|ref\|XP_964696.1\| hypothetical protein NCU09261 [Neurospora crassa OR74A] gi\|32422419, gi\|... - gi\|38567013\|emb\|CAE76312.1\| conserved hypothetical protein [Neurospora crassa], gi\|32422419\|ref\|XP_3...	247.0	[0..4]	[214..2]
gi\|73979207 - gi\|73979207\|ref\|XP_539958.2\| PREDICTED: similar to SLD5 [Canis familiaris]	243.0	[0..2]	[214..81]
SLD5_RAT - DNA replication complex GINS protein SLD5 OS=Rattus norvegicus GN=Gins4 PE=1 SV=1	239.0	[0..2]	[214..13]
SLD5_MOUSE - DNA replication complex GINS protein SLD5 OS=Mus musculus GN=Gins4 PE=1 SV=1	235.0	[0..2]	[214..13]
GINS4 - GINS complex subunit 4 (Sld5 homolog)	234.0	[0..2]	[214..13]
gi\|114619902 - gi\|114619902\|ref\|XP_001138293.1\| PREDICTED: SLD5 [Pan troglodytes]	233.0	[0..2]	[214..13]
gi\|109086239 - gi\|109086239\|ref\|XP_001094432.1\| PREDICTED: similar to SLD5 [Macaca mulatta]	232.0	[0..2]	[214..13]
SLD5_GIBZE - DNA replication complex GINS protein SLD5 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 907... SLD5_GIBZE - DNA replication complex GINS protein SLD5 OS=Gibberella zeae GN=SLD5 PE=3 SV=1	231.0	[0..4]	[198..3]

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Predicted Domain #1

Region A:
Residues: [1-214]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEWDADDLLI EPTTEVENDY EDLCTQWVNE RMAPDLLPFA EEIVSRVLDR IEAQRETLQL  60
   61 AIGTSSATSY RSVLMQTELE RVKFVLRSYM RTRINKIDKY AQYIQSHPNL LLYLSSPERQ 120
  121 YLLRHQQIVH RHYMDSFLRE VPAKMNKLDD KVGNLSMVAS PDMDTAVFCV VNESVEENFR 180
  181 VSENEYITLD KGDVLILRYS VISDYLRLGV VSLI

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Detection Method:	PSI-BLAST
Confidence:	61.69897
Match:	2e9xD
Description:	No description for 2e9xD was found.

Predicted functions:

Term	Confidence	Notes
3'-5' DNA helicase activity	3.30007058745861	bayes_pls_golite062009
DNA helicase activity	2.7662250039458	bayes_pls_golite062009
binding	1.27082628880017	bayes_pls_golite062009
transcription regulator activity	1.2336233528067	bayes_pls_golite062009
helicase activity	1.2110072302388	bayes_pls_golite062009
protein binding	0.870806795328732	bayes_pls_golite062009
nucleoside-triphosphatase activity	0.406116199163083	bayes_pls_golite062009
pyrophosphatase activity	0.350000641617868	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	0.33576520693158	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	0.333445385039412	bayes_pls_golite062009
catalytic activity	0.161911144249814	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: