YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|75210657, gi\|...
Organism:	Escherichia coli B171
Length:	287 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|75210657, gi|....

Description	E-value	Query Range	Subject Range
gi\|148138 - gi\|148138\|gb\|AAA24736.1\| ATP synthase gamma subunit [Escherichia coli]	369.0	[0..1]	[287..1]
ATPG_ECO24 - ATP synthase gamma chain OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=atpG PE=3 SV=1 gi\|170766612, gi... - gi\|170766612\|ref\|ZP_02901065.1\| ATP synthase F1, gamma subunit [Escherichia albertii TW07627], gi\|17... ATPG_ECO55 - ATP synthase gamma chain OS=Escherichia coli (strain 55989 / EAEC) GN=atpG PE=3 SV=1	368.0	[0..1]	[287..1]
gi\|6625702 - gi\|6625702\|gb\|AAF19361.1\|AF188265_7 ATP synthase subunit gamma [Salmonella typhimurium] gi\|6625702\|gb\|AA... - ATP synthase subunit gamma [Salmonella typhimurium]	368.0	[0..1]	[287..1]
ATPG_SHISS - ATP synthase gamma chain OS=Shigella sonnei (strain Ss046) GN=atpG PE=3 SV=1	365.0	[0..1]	[287..1]
ATPG_SHIBS - ATP synthase gamma chain OS=Shigella boydii serotype 4 (strain Sb227) GN=atpG PE=3 SV=1	365.0	[0..1]	[287..1]
ATPG_SALPA - ATP synthase gamma chain OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=atpG PE=3 SV=1 ATPG_SALPA - ATP synthase gamma chain OS=Salmonella paratyphi A GN=atpG PE=3 SV=1 gi\|197263603, gi... - gi\|197263603\|ref\|ZP_03163677.1\| ATP synthase F1, gamma subunit [Salmonella enterica subsp. enterica ... ATPG_SALPK - ATP synthase gamma chain OS=Salmonella paratyphi A (strain AKU_12601) GN=atpG PE=3 SV=1	364.0	[0..1]	[287..1]
gi\|167554379, gi... - gi\|205321437\|gb\|EDZ09276.1\| ATP synthase F1, gamma subunit [Salmonella enterica subsp. enterica sero... gi\|205327338, gi... - gi\|205327338\|gb\|EDZ14102.1\| ATP synthase F1, gamma subunit [Salmonella enterica subsp. enterica sero... gi\|238913119 - gi\|238913119\|ref\|ZP_04656956.1\| F0F1 ATP synthase subunit gamma [Salmonella enterica subsp. enterica... ATPG_SALTY - ATP synthase gamma chain OS=Salmonella typhimurium GN=atpG PE=2 SV=1 gi\|200389152, gi... - gi\|200389152\|ref\|ZP_03215764.1\| ATP synthase F1, gamma subunit [Salmonella enterica subsp. enterica ... gi\|204322239, gi... - gi\|204928806\|ref\|ZP_03220005.1\| ATP synthase F1, gamma subunit [Salmonella enterica subsp. enterica ... ATPG_SALEP - ATP synthase gamma chain OS=Salmonella enteritidis PT4 (strain P125109) GN=atpG PE=3 SV=1 ATPG_SALPC - ATP synthase gamma chain OS=Salmonella paratyphi C (strain RKS4594) GN=atpG PE=3 SV=1 gi\|194469716, gi... - gi\|194469716\|ref\|ZP_03075700.1\| ATP synthase F1, gamma subunit [Salmonella enterica subsp. enterica ... ATPG_SALCH - ATP synthase gamma chain OS=Salmonella choleraesuis GN=atpG PE=3 SV=1 ATPG_SALSV - ATP synthase gamma chain OS=Salmonella schwarzengrund (strain CVM19633) GN=atpG PE=3 SV=1 ATPG_SALA4 - ATP synthase gamma chain OS=Salmonella agona (strain SL483) GN=atpG PE=3 SV=1 ATPG_SALDC - ATP synthase gamma chain OS=Salmonella dublin (strain CT_02021853) GN=atpG PE=3 SV=1 gi\|168464799, gi... - gi\|195632150\|gb\|EDX50634.1\| ATP synthase F1, gamma subunit [Salmonella enterica subsp. enterica sero... gi\|205340521, gi... - gi\|205340521\|gb\|EDZ27285.1\| ATP synthase F1, gamma subunit [Salmonella enterica subsp. enterica sero... ATPG_SALNS - ATP synthase gamma chain OS=Salmonella newport (strain SL254) GN=atpG PE=3 SV=1 ATPG_SALHS - ATP synthase gamma chain OS=Salmonella heidelberg (strain SL476) GN=atpG PE=3 SV=1 gi\|205331686, gi... - gi\|205331686\|gb\|EDZ18450.1\| ATP synthase F1, gamma subunit [Salmonella enterica subsp. enterica sero... gi\|168239810, gi... - gi\|197287556\|gb\|EDY26949.1\| ATP synthase F1, gamma subunit [Salmonella enterica subsp. enterica sero... gi\|168245315, gi... - gi\|205335969\|gb\|EDZ22733.1\| ATP synthase F1, gamma subunit [Salmonella enterica subsp. enterica sero... gi\|168263238, gi... - gi\|205348251\|gb\|EDZ34882.1\| ATP synthase F1, gamma subunit [Salmonella enterica subsp. enterica sero... ATPG_SALPB - ATP synthase gamma chain OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=atpG PE=3 SV=1 ATPG_SALPB - ATP synthase gamma chain OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=atpG PE=3 SV=1 ATPG_SALTY - ATP synthase gamma chain OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=atpG PE=... ATPG_SALCH - ATP synthase gamma chain OS=Salmonella choleraesuis (strain SC-B67) GN=atpG PE=3 SV=1 ATPG_SALTY - ATP synthase gamma chain OS=Salmonella typhimurium GN=atpG PE=2 SV=1 ATPG_SALCH - ATP synthase gamma chain OS=Salmonella choleraesuis GN=atpG PE=3 SV=1 lcl\|NC_016856.1_... - [gene=atpG] [protein=F0F1 ATP synthase subunit gamma] [protein_id=YP_005240134.1] [location=compleme...	363.0	[0..1]	[287..1]
gi\|77961817, gi\|... - gi\|77961817\|ref\|ZP_00825647.1\| COG0224: F0F1-type ATP synthase, gamma subunit [Yersinia mollaretii A...	363.0	[0..1]	[287..1]
ATPG_SHEAM - ATP synthase gamma chain OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=atpG PE=3 SV=1	361.0	[0..1]	[287..1]
gi\|213052669 - gi\|213052669\|ref\|ZP_03345547.1\| F0F1 ATP synthase subunit gamma [Salmonella enterica subsp. enterica... gi\|29139584, gi\|... - gi\|29143948\|ref\|NP_807290.1\| F0F1 ATP synthase subunit gamma [Salmonella enterica subsp. enterica se... gi\|16762460 - gi\|16762460\|ref\|NP_458077.1\| F0F1 ATP synthase subunit gamma [Salmonella enterica subsp. enterica se... ATPG_SALTI - ATP synthase gamma chain OS=Salmonella typhi GN=atpG PE=3 SV=1 ATPG_SALTI - ATP synthase gamma chain OS=Salmonella typhi GN=atpG PE=3 SV=1 gi\|214001325 - gi\|214001325\|ref\|ZP_03412060.1\| F0F1 ATP synthase subunit gamma [Salmonella enterica subsp. enterica... gi\|213427469 - gi\|213427469\|ref\|ZP_03360219.1\| F0F1 ATP synthase subunit gamma [Salmonella enterica subsp. enterica... gi\|213586050 - gi\|213586050\|ref\|ZP_03367876.1\| F0F1 ATP synthase subunit gamma [Salmonella enterica subsp. enterica... gi\|213649860 - gi\|213649860\|ref\|ZP_03379913.1\| F0F1 ATP synthase subunit gamma [Salmonella enterica subsp. enterica... gi\|213857969 - gi\|213857969\|ref\|ZP_03384940.1\| F0F1 ATP synthase subunit gamma [Salmonella enterica subsp. enterica...	361.0	[0..1]	[287..1]

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Predicted Domain #1

Region A:
Residues: [1-287]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGAKEIRSK IASVQNTQKI TKAMEMVAAS KMRKSQDRMA ASRPYAETMR KVIGHLAHGN  60
   61 LEYKHPYLED RDVKRVGYLV VSTDRGLCGG LNINLFKKLL AEMKTWTDKG VQCDLAMIGS 120
  121 KGVSFFNSVG GNVVAQVTGM GDNPSLSELI GPVKVMLQAY DEGRLDKLYI VSNKFINTMS 180
  181 QVPTISQLLP LPASDDDDLK HKSWDYLYEP DPKALLDTLL RRYVESQVYQ GVVENLASEQ 240
  241 AARMVAMKAA TDNGGSLIKE LQLVYNKARQ ASITQELTEI VSGAAAV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	77.0
Match:	1fs0G
Description:	ATP synthase (F1-ATPase), gamma subunit
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
hydrogen ion transporting ATP synthase activity, rotational mechanism	15.1137831131288	bayes_pls_golite062009
hydrogen ion transmembrane transporter activity	13.4145652211868	bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity	11.6641947022993	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	10.5487930833633	bayes_pls_golite062009
cation transmembrane transporter activity	6.80604482262055	bayes_pls_golite062009
ion transmembrane transporter activity	6.69705984340533	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	6.26502594800359	bayes_pls_golite062009
proton-transporting ATPase activity, rotational mechanism	5.63110240369142	bayes_pls_golite062009
transporter activity	4.45226670606147	bayes_pls_golite062009
hydrogen-exporting ATPase activity, phosphorylative mechanism	4.41868118040901	bayes_pls_golite062009
substrate-specific transporter activity	4.39356148903647	bayes_pls_golite062009
transmembrane transporter activity	4.37099130240158	bayes_pls_golite062009
cation-transporting ATPase activity	3.59230188331019	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of ions	1.90203817584499	bayes_pls_golite062009
binding	1.15817227356277	bayes_pls_golite062009
nucleoside-triphosphatase activity	1.06444952929525	bayes_pls_golite062009
pyrophosphatase activity	0.999037106125156	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	0.982260922227037	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	0.979897673854905	bayes_pls_golite062009
ATPase activity	0.97716527277771	bayes_pls_golite062009
primary active transmembrane transporter activity	0.832120661263195	bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity	0.826276552217418	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	0.799415003044834	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of substances	0.796014711689645	bayes_pls_golite062009
ATPase activity, coupled to movement of substances	0.795885962810984	bayes_pls_golite062009
active transmembrane transporter activity	0.786890420776467	bayes_pls_golite062009
protein binding	0.556386379655548	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	0.549067982072581	bayes_pls_golite062009
ATPase activity, coupled	0.330850590075407	bayes_pls_golite062009
hydrolase activity	0.136524426848017	bayes_pls_golite062009
catalytic activity	0.0130900138976991	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: