| Protein: | NOP9_SCHPO |
| Organism: | Schizosaccharomyces pombe 972h- |
| Length: | 655 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NOP9_SCHPO.
| Description | E-value | Query Range |
Subject Range |
|
|
363.0 | [0..296] | [650..695] |
|
|
357.0 | [0..274] | [639..745] |
|
|
356.0 | [0..297] | [640..558] |
|
|
356.0 | [0..294] | [638..494] |
|
|
354.0 | [0..284] | [643..600] |
|
Region A: Residues: [1-80] |
1 11 21 31 41 51
| | | | | |
1 MPKKRKTRGK KHSAKQKEEE VNSVVSPGIA KNDEGAGNDE GAYQVNRYTN EPVQPFFGAL 60
61 DPEEEKYFQQ AEQAFANHFT
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [81-289] |
1 11 21 31 41 51
| | | | | |
1 RENEDTRFFV DSIYREVQGK ELIVCNNVFG SKVLEKLFPL STSRQIKSFF SALNGHYVEL 60
61 IQTTFGSYAF EKLLSHMAAI LNLETQGVTE DQDDVLEGEN ENVFMTAETL LMYMYNEIRP 120
121 EVSMLMSHKL AVHVLGKIFL LLDGYRFVYH DGNRTTMESI SVPESFPQFA YSIIDSATDN 180
181 LDTPELRAYC VDKYASQIMR AFIRIDFER
|
| Detection Method: | |
| Confidence: | 3.01 |
| Match: | 1ib2A |
| Description: | Pumilio 1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 3.36069436734718 | bayes_pls_golite062009 |
| binding | 2.36800795249393 | bayes_pls_golite062009 |
| protein transporter activity | 2.15379995351782 | bayes_pls_golite062009 |
| protein binding | 2.0097220759196 | bayes_pls_golite062009 |
| transporter activity | 1.64183523191339 | bayes_pls_golite062009 |
| nucleic acid binding | 1.59410102249793 | bayes_pls_golite062009 |
| structural molecule activity | 1.3916221897201 | bayes_pls_golite062009 |
| mRNA binding | 1.35186555044783 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 1.31208344109907 | bayes_pls_golite062009 |
| signal sequence binding | 1.17854394242826 | bayes_pls_golite062009 |
| transcription regulator activity | 1.08645493064764 | bayes_pls_golite062009 |
| DNA binding | 0.956143892328242 | bayes_pls_golite062009 |
| nuclear localization sequence binding | 0.856430517710521 | bayes_pls_golite062009 |
| transmembrane transporter activity | 0.494225771145501 | bayes_pls_golite062009 |
| transcription factor activity | 0.371244009721798 | bayes_pls_golite062009 |
| protein transmembrane transporter activity | 0.258196347187333 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 0.18256596047763 | bayes_pls_golite062009 |
| nuclear export signal receptor activity | 0.0681894540457957 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 0.0149231171554869 | bayes_pls_golite062009 |
|
Region A: Residues: [290-655] |
1 11 21 31 41 51
| | | | | |
1 SKKTKKKHDP RLVSKLLLSN EYDLKELPFM ETLLKDETGS RILEVIVENM SASHLLRFYA 60
61 VFEGRFYRLC VHPIANFIMQ RYIRRLGRKE IGSVIDELKK NTDNIIRKSF LPVLRTLLEK 120
121 SNHLHCYQDD IFSMIQTSVT NSGKDANIIP CLLRSKHKRD KANPENKERK LVNNLLGAQL 180
181 LEEMLHCEKQ HIQLLLDSVL DLSKEQILEY CLETVSSHLI EGILDLSDLN PVFLKKFLNI 240
241 LSGSFATLAV SAPGSHIVDK AWKATRALPL YRTRIVRELA EGGDDVKFDF YGKKVCSNWK 300
301 VELFRRAPDE WYRFMKQDEP SKRVHERARQ YGRIVSGSSA NTQPLGEKRS TENDEELESG 360
361 PKRVKV
|
| Detection Method: | |
| Confidence: | 82.39794 |
| Match: | 1ib2A |
| Description: | Pumilio 1 |
| Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 3.51706019693543 | bayes_pls_golite062009 |
| protein transporter activity | 2.53371837790268 | bayes_pls_golite062009 |
| binding | 2.47395644967726 | bayes_pls_golite062009 |
| protein binding | 2.13529412360404 | bayes_pls_golite062009 |
| transporter activity | 1.75215962704174 | bayes_pls_golite062009 |
| nucleic acid binding | 1.64539435934931 | bayes_pls_golite062009 |
| mRNA binding | 1.49239143012448 | bayes_pls_golite062009 |
| signal sequence binding | 1.46991748555798 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 1.45007172288203 | bayes_pls_golite062009 |
| structural molecule activity | 1.39201458088376 | bayes_pls_golite062009 |
| nuclear localization sequence binding | 1.27627067567874 | bayes_pls_golite062009 |
| transcription regulator activity | 1.06250847754412 | bayes_pls_golite062009 |
| DNA binding | 0.946847037737779 | bayes_pls_golite062009 |
| protein transmembrane transporter activity | 0.58863391569272 | bayes_pls_golite062009 |
| transmembrane transporter activity | 0.506596930838594 | bayes_pls_golite062009 |
| nuclear export signal receptor activity | 0.501965300276747 | bayes_pls_golite062009 |
| transcription factor activity | 0.362911773502049 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 0.229272703956702 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.0330689772947346 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 0.00566872062869428 | bayes_pls_golite062009 |
