YRC Public Data Repository - Protein Structure Prediction

Protein:	FADA_SALTY
Organism:	Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Length:	387 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FADA_SALTY.

Description	E-value	Query Range	Subject Range
gi\|77996685, gi\|... - gi\|78044570\|ref\|YP_360188.1\| acetyl-CoA acetyltransferase [Carboxydothermus hydrogenoformans Z-2901]...	4.0E-90	[1..387]	[1..393]
gi\|13622708, gi\|... - gi\|15675510\|ref\|NP_269684.1\| putative acetyl-CoA:acetyltransferase [Streptococcus pyogenes M1 GAS], ... gi\|71853939, gi\|... - gi\|71911157\|ref\|YP_282707.1\| acetyl-CoA acetyltransferase [Streptococcus pyogenes MGAS5005], gi\|7185...	1.0E-89	[1..384]	[1..391]
gi\|59710631, gi\|... - gi\|59710631\|ref\|YP_203407.1\| acetyl-CoA acetyltransferase [Vibrio fischeri ES114], gi\|59478732\|gb\|AA...	2.0E-89	[1..386]	[23..408]
gi\|94544478, gi\|... - gi\|94990970\|ref\|YP_599070.1\| Acetyl-CoA acetyltransferase [Streptococcus pyogenes MGAS10270], gi\|945... gi\|71904047, gi\|... - gi\|71904047\|ref\|YP_280850.1\| acetyl-CoA acetyltransferase [Streptococcus pyogenes MGAS6180], gi\|7180...	2.0E-89	[1..384]	[1..391]
gi\|50914736, gi\|... - gi\|50914736\|ref\|YP_060708.1\| Acetyl-CoA acetyltransferase [Streptococcus pyogenes MGAS10394], gi\|509...	2.0E-89	[1..384]	[1..391]
gi\|94542477, gi\|... - gi\|94988969\|ref\|YP_597070.1\| acetyl-CoA acetyltransferase [Streptococcus pyogenes MGAS9429], gi\|9454... gi\|94992862, gi\|... - gi\|94992862\|ref\|YP_600961.1\| Acetyl-CoA acetyltransferase [Streptococcus pyogenes MGAS2096], gi\|9454...	4.0E-89	[1..384]	[1..391]
gi\|90573693, gi\|... - gi\|90573693\|ref\|ZP_01230204.1\| hypothetical protein CdifQ_02002956 [Clostridium difficile QCD-32g58]... gi\|255518068 - gi\|255518068\|ref\|ZP_05385744.1\| putative acetyl-CoA acetyltransferase [Clostridium difficile QCD-97b... gi\|255651184 - gi\|255651184\|ref\|ZP_05398086.1\| putative acetyl-CoA acetyltransferase [Clostridium difficile QCD-37x... gi\|254976268 - gi\|254976268\|ref\|ZP_05272740.1\| putative acetyl-CoA acetyltransferase [Clostridium difficile QCD-66c... gi\|255093654 - gi\|255093654\|ref\|ZP_05323132.1\| putative acetyl-CoA acetyltransferase [Clostridium difficile CIP 107... gi\|255315403 - gi\|255315403\|ref\|ZP_05356986.1\| putative acetyl-CoA acetyltransferase [Clostridium difficile QCD-76w...	4.0E-89	[1..386]	[1..392]
gi\|78223265, gi\|... - gi\|78223265\|ref\|YP_385012.1\| thiolase [Geobacter metallireducens GS-15], gi\|78194520\|gb\|ABB32287.1\| ...	9.0E-89	[1..387]	[1..399]
gi\|115251727, gi... - gi\|126700290\|ref\|YP_001089187.1\| putative acetyl-CoA acetyltransferase [Clostridium difficile 630], ...	1.0E-88	[1..386]	[1..392]

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Predicted Domain #1

Region A:
Residues: [1-387]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQVVIVDAI RTPMGRSKGG AFRNVRAEDL SAHLMRSLLA RNPSLTAATL DDIYWGCVQQ  60
   61 TLEQGFNIAR NAALLAEIPH SVPAVTVNRL CGSSMQALHD AARMIMTGDA QVCLVGGVEH 120
  121 MGHVPMSHGV DFHPGLSRNV AKAAGMMGLT AEMLSRLHGI SREMQDQFAA RSHARAWAAT 180
  181 QSGAFKTEII PTGGHDADGV LKQFNYDEVI RPETTVEALS TLRPAFDPVS GTVTAGTSSA 240
  241 LSDGAAAMLV MSESRARELG LKPRARIRSM AVVGCDPSIM GYGPVPASKL ALKKAGLSAS 300
  301 DIDVFEMNEA FAAQILPCIK DLGLMEQIDE KINLNGGAIA LGHPLGCSGA RISTTLINLM 360
  361 ERKDAQFGLA TMCIGLGQGI ATVFERV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	89.0
Match:	1wdkC
Description:	fatty acid beta-oxidation multienzyme complex from Pseudomonas fragi, form I (native2)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
acetyl-CoA C-acyltransferase activity	8.08119341370748	bayes_pls_golite062009
long-chain-3-hydroxyacyl-CoA dehydrogenase activity	7.45371477074071	bayes_pls_golite062009
long-chain-enoyl-CoA hydratase activity	5.63866392580915	bayes_pls_golite062009
transferase activity, transferring acyl groups	4.96408928512745	bayes_pls_golite062009
fatty acid synthase activity	3.79121338118181	bayes_pls_golite062009
3-oxoacyl-[acyl-carrier-protein] synthase activity	3.71249191203055	bayes_pls_golite062009
C-acyltransferase activity	3.27532895419051	bayes_pls_golite062009
transferase activity, transferring acyl groups other than amino-acyl groups	3.14957464437124	bayes_pls_golite062009
acyltransferase activity	3.06879684191353	bayes_pls_golite062009
transferase activity	2.15834234036431	bayes_pls_golite062009
catalytic activity	2.14505178497871	bayes_pls_golite062009
3-hydroxyacyl-CoA dehydrogenase activity	1.87304265492939	bayes_pls_golite062009
transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer	1.77798276950874	bayes_pls_golite062009
acetyl-CoA C-acetyltransferase activity	1.50839304016514	bayes_pls_golite062009
C-acetyltransferase activity	1.19264084089277	bayes_pls_golite062009
hydroxymethylglutaryl-CoA synthase activity	1.16785899347652	bayes_pls_golite062009
acetyltransferase activity	0.6519546920419	bayes_pls_golite062009
binding	0.415385255550741	bayes_pls_golite062009
enoyl-CoA hydratase activity	0.21899828831708	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: