YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30264394, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	336 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30264394, gi|....

Description	E-value	Query Range	Subject Range
gi\|86553821, gi\|... - gi\|86605279\|ref\|YP_474042.1\| DNA polymerase III, subunits gamma and tau [Cyanobacteria bacterium Yel... gi\|86553821, gi\|... - gi\|86605279\|ref\|YP_474042.1\| DNA polymerase III, subunits gamma and tau [Synechococcus sp. JA-3-3Ab]...	1.0E-51	[1..333]	[29..361]
gi\|86557321, gi\|... - gi\|86608779\|ref\|YP_477541.1\| DNA polymerase III, subunits gamma and tau [Cyanobacteria bacterium Yel... gi\|86557321, gi\|... - gi\|86608779\|ref\|YP_477541.1\| DNA polymerase III, subunits gamma and tau [Synechococcus sp. JA-2-3B'a...	2.0E-51	[1..333]	[29..361]
gi\|186684248, gi... - gi\|23129966\|ref\|ZP_00111787.1\| COG2812: DNA polymerase III, gamma/tau subunits [Nostoc punctiforme P...	4.0E-50	[3..333]	[27..359]
gi\|66963325, gi\|... - gi\|66963325\|ref\|ZP_00410897.1\| DNA-directed DNA polymerase [Arthrobacter sp. FB24], gi\|66870985\|gb\|E...	1.0E-49	[2..333]	[27..364]
gi\|83755619, gi\|... - gi\|83814225\|ref\|YP_446655.1\| DNA polymerase III, subunits gamma and tau, putative [Salinibacter rube...	1.0E-49	[2..336]	[29..368]
gi\|75702157, gi\|... - gi\|75908432\|ref\|YP_322728.1\| AAA ATPase, central region [Anabaena variabilis ATCC 29413], gi\|7570215...	1.0E-49	[3..333]	[27..359]
gi\|251837787, gi... - gi\|253572655\|ref\|ZP_04850056.1\| DNA polymerase III subunit gamma/tau [Bacteroides sp. 1_1_6], gi\|251... gi\|29347020, gi\|... - gi\|29347020\|ref\|NP_810523.1\| DNA polymerase III subunit gamma/tau [Bacteroides thetaiotaomicron VPI-...	1.0E-49	[3..336]	[28..362]
gi\|37521178, gi\|... - gi\|37521178\|ref\|NP_924555.1\| DNA polymerase III gamma and tau subunits [Gloeobacter violaceus PCC 74...	2.0E-49	[1..333]	[25..357]
gi\|17232424, gi\|... - gi\|17232424\|ref\|NP_488972.1\| DNA polymerase III gamma and tau subunits [Nostoc sp. PCC 7120], gi\|171... gi\|25531836 - pir\|\|AD2422 DNA polymerase III gamma and tau chains [imported] - Nostoc sp. (strain PCC 7120)	3.0E-49	[3..333]	[27..359]
gi\|148266337, gi... - gi\|88935683\|ref\|ZP_01141311.1\| ATPas [Geobacter uraniumreducens Rf4], gi\|88917579\|gb\|EAR36770.1\| ATP...	3.0E-49	[2..336]	[26..361]

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Predicted Domain #1

Region A:
Residues: [1-336]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDIHKKIKK KQFAPLYLLY GTEAFFINET IKLITTEALE EEDREFNVVT YDLEEAYLED  60
   61 VVEDARTLPF FGERKVLLIK SPLFLTSQKE KLEQNIKILE EYIGEPSPFS ILVFVAPYEK 120
  121 LDERKKITKL LKKTADIVEA NAMQVQDVQK WIVARAEEGH VHIDNAAVSL LLELVGSNVT 180
  181 MLAKEMDKLT LYVGMGGEIT PKLVAELVPK SVEQNVFALT EKVVKKDIAG AMQILDGLFT 240
  241 QQEEPIKLLA LLVSQFRLLH QVKELQQRGY GQNQIASHIG VHPYRVKLAM NQTKFFSFEE 300
  301 LKKVIIELAE ADYSMKTGKM DKKLVLEFFL MRLNHM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.045757
Match:	1jr3A
Description:	gamma subunit; gamma subunit of DNA polymerase III, N-domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
DNA-directed DNA polymerase activity	6.09279996112705	bayes_pls_golite062009
DNA polymerase activity	6.04865791514294	bayes_pls_golite062009
nucleotidyltransferase activity	3.99580940620614	bayes_pls_golite062009
pyrophosphatase activity	2.13284212711072	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	1.77451606086272	bayes_pls_golite062009
binding	1.41264401383678	bayes_pls_golite062009
transferase activity	1.23626141560528	bayes_pls_golite062009
DNA-dependent ATPase activity	1.1653223755451	bayes_pls_golite062009
catalytic activity	1.00104173493322	bayes_pls_golite062009
helicase activity	0.895387263223335	bayes_pls_golite062009
DNA helicase activity	0.8104901979223	bayes_pls_golite062009
nucleic acid binding	0.625617128641089	bayes_pls_golite062009
protein-DNA loading ATPase activity	0.24468171323128	bayes_pls_golite062009
DNA clamp loader activity	0.20238478387743	bayes_pls_golite062009
ATP-dependent helicase activity	0.156322124775303	bayes_pls_golite062009
purine NTP-dependent helicase activity	0.156322124775303	bayes_pls_golite062009
nucleoside-triphosphatase activity	0.147579541298736	bayes_pls_golite062009
nucleotide binding	0.114848452385726	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	0.113504049290503	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	0.111293884322157	bayes_pls_golite062009
purine nucleotide binding	0.10713474095071	bayes_pls_golite062009
purine ribonucleotide binding	0.0916519414118148	bayes_pls_golite062009
ribonucleotide binding	0.0915913646217636	bayes_pls_golite062009
ATP-dependent DNA helicase activity	0.0398638249772338	bayes_pls_golite062009
DNA binding	0.0064778111446141	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: