YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30254262, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	449 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30254262, gi|....

Description	E-value	Query Range	Subject Range
gi\|67668083, gi\|... - gi\|67668083\|ref\|ZP_00465278.1\| General substrate transporter:Major facilitator superfamily [Burkhold...	1.0E-57	[1..448]	[1008..1475]
gi\|60467752, gi\|... - gi\|60467752\|gb\|EAL65769.1\| hypothetical protein DDB0191430 [Dictyostelium discoideum], gi\|29500764\|g... gi\|60467752, gi\|... - gi\|66810832\|ref\|XP_639123.1\| major facilitator superfamily transporter [Dictyostelium discoideum AX4...	1.0E-47	[24..416]	[595..1019]
SNF3 - Plasma membrane low glucose sensor that regulates glucose transport; contains 12 predicted transmemb... SNF3_YEAST - High-affinity glucose transporter SNF3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=S...	4.0E-47	[3..448]	[71..550]
gi\|169764102 - gi\|169764102\|ref\|XP_001727951.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83770979 - gi\|83770979\|dbj\|BAE61112.1\| unnamed protein product [Aspergillus oryzae]	4.0E-45	[11..448]	[193..649]
gi\|78495751, gi\|... - gi\|78495751\|ref\|ZP_00847969.1\| Major facilitator superfamily MFS_1 [Rhodopseudomonas palustris BisB1...	1.0E-44	[2..442]	[422..859]
gi\|85110133 - gi\|85110133\|ref\|XP_963279.1\| hypothetical protein [Neurospora crassa OR74A] gi\|28924953, gi\|... - gi\|32417950\|ref\|XP_329453.1\| hypothetical protein [Neurospora crassa], gi\|28924953\|gb\|EAA34043.1\| hy...	4.0E-44	[10..448]	[362..795]
gi\|47568113, gi\|... - gi\|47568113\|ref\|ZP_00238818.1\| glycerol-3-phosphate transporter [Bacillus cereus G9241], gi\|47555267...	2.0E-43	[1..449]	[1..449]
gi\|110827356, gi... - gi\|111615223\|ref\|ZP_01402289.1\| Sugar phosphate permease-like [Verminephrobacter eiseniae EF01-2], g...	2.0E-43	[30..449]	[301..699]
gi\|49476862, gi\|... - gi\|49476862\|ref\|YP_034918.1\| glycerol-3-phosphate transporter [Bacillus thuringiensis serovar konkuk...	3.0E-43	[1..449]	[1..449]

Back

Predicted Domain #1

Region A:
Residues: [1-449]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFFTQFFKPA PHAERLPADR VDSEYRKLRL QVFLGIFIGY AGYYFVRKNF SLAMPYLIEQ  60
   61 GFSKGELGVI LSAVSIAYGL SKFLMGIVSD RCNPRYFLAA GLFLSGIINI IFGSFSFITT 120
  121 SIILMFVLQF LNGWVQGMGW PPCGRTMVHW FSISERGTKM SIWNVAHNVG GALMPSLVTL 180
  181 GLYFFANDWK SIFYFPGILS ILVGVYVLIT MKDTPQSCGL PSIEEHTGEY PPDEKIKDRE 240
  241 RELSAKEILF KYVLNNKFLW YIAIANVFVY FVRYGVVDWA PTYLVEEKSF THSSSRTAYA 300
  301 LYEWAGIPGT LLCGWMSDKL FKGRRAPAGI LFMVGVFIAV LVYWLNPPGN PMVDSIALVA 360
  361 IGFLIYGPVM LIGLHALDLA PKKAAGTAAG LTGFFGYLGG AAFASAAMGF IVDAFGWDGG 420
  421 FILLLASCVL AMFFLALTLK TGSVKQKQA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.39794
Match:	1pw4A
Description:	Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
glycerol transmembrane transporter activity	7.11654923455995	bayes_pls_golite062009
alcohol transmembrane transporter activity	6.7545566917184	bayes_pls_golite062009
polyol transmembrane transporter activity	6.7545566917184	bayes_pls_golite062009
glycerol-3-phosphate transmembrane transporter activity	6.56587510931539	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	5.46247398538901	bayes_pls_golite062009
ion transmembrane transporter activity	4.58978526526921	bayes_pls_golite062009
transporter activity	4.09176719149278	bayes_pls_golite062009
anion transmembrane transporter activity	3.94605227012838	bayes_pls_golite062009
cation transmembrane transporter activity	3.88180006470231	bayes_pls_golite062009
substrate-specific transporter activity	3.59744164024479	bayes_pls_golite062009
transmembrane transporter activity	3.5865018981083	bayes_pls_golite062009
organic anion transmembrane transporter activity	3.3413526350788	bayes_pls_golite062009
inorganic anion transmembrane transporter activity	2.52916479889426	bayes_pls_golite062009
organic acid transmembrane transporter activity	2.15783210522667	bayes_pls_golite062009
active transmembrane transporter activity	1.59419818573076	bayes_pls_golite062009
secondary active transmembrane transporter activity	1.22264637452409	bayes_pls_golite062009
binding	0.805286077372817	bayes_pls_golite062009
symporter activity	0.74591237387473	bayes_pls_golite062009
solute:cation symporter activity	0.74591237387473	bayes_pls_golite062009
phosphate transmembrane transporter activity	0.312628600969375	bayes_pls_golite062009
cation:sugar symporter activity	0.143419068761182	bayes_pls_golite062009
sugar:hydrogen symporter activity	0.143419068761182	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: