YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39996120, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	185 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39996120, gi|....

Description	E-value	Query Range	Subject Range
gi\|83643661, gi\|... - gi\|83643661\|ref\|YP_432096.1\| hypoxanthine-guanine phosphoribosyltransferase [Hahella chejuensis KCTC...	159.0	[0..1]	[184..1]
gi\|224500330 - gi\|224500330\|ref\|ZP_03668679.1\| hypothetical protein LmonF1_11939 [Listeria monocytogenes Finland 19... gi\|224503461 - gi\|224503461\|ref\|ZP_03671768.1\| hypothetical protein LmonFR_13287 [Listeria monocytogenes FSL R2-561... gi\|126941298, gi... - gi\|254900996\|ref\|ZP_05260920.1\| hypothetical protein LmonJ_14318 [Listeria monocytogenes J0161], gi\|... gi\|254913936, gi... - gi\|254913936\|ref\|ZP_05263948.1\| hypothetical protein LmonJ2_14108 [Listeria monocytogenes J2818], gi... gi\|133733948, gi... - gi\|254938274\|ref\|ZP_05269971.1\| hypothetical protein LmonF6_14141 [Listeria monocytogenes F6900], gi... gi\|47014358, gi\|... - gi\|47097258\|ref\|ZP_00234818.1\| conserved hypothetical protein/hypoxanthine phosphoribosyltransferase... TILS_LISMO - Bifunctional protein TilS/HprT OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) ... TILS_LISMO - Bifunctional protein tilS/hprT OS=Listeria monocytogenes GN=tilS/hprT PE=3 SV=1	158.0	[0..16]	[183..476]
TILS_LISMF - Bifunctional protein TilS/HprT OS=Listeria monocytogenes serotype 4b (strain F2365) GN=tilS/hprT PE=...	157.0	[0..16]	[183..476]
TILS_LISIN - Bifunctional protein TilS/HprT OS=Listeria innocua serovar 6a (strain CLIP 11262) GN=tilS/hprT PE=3 ... TILS_LISIN - Bifunctional protein tilS/hprT OS=Listeria innocua GN=tilS/hprT PE=3 SV=1	157.0	[0..16]	[183..476]
gi\|226222848, gi... - gi\|226222848\|ref\|YP_002756955.1\| hypothetical protein Lm4b_00217 [Listeria monocytogenes Clip81459],... gi\|47018468, gi\|... - gi\|47093161\|ref\|ZP_00230936.1\| conserved hypothetical protein/hypoxanthine phosphoribosyltransferase... gi\|21667249 - gi\|21667249\|gb\|AAM74001.1\|AF467001_2 YacA/HprT-like protein [Listeria monocytogenes] gi\|153200654, gi... - gi\|254933059\|ref\|ZP_05266418.1\| hypothetical protein LmonH_11532 [Listeria monocytogenes HPB2262], g...	157.0	[0..16]	[183..476]
gi\|26987483, gi\|... - gi\|26987483\|ref\|NP_742908.1\| hypoxanthine-guanine phosphoribosyltransferase [Pseudomonas putida KT24... gi\|148546021, gi... - gi\|82738466\|ref\|ZP_00901298.1\| hypoxanthine phosphoribosyltransferase, putative [Pseudomonas putida ... tr\|E4R4B4\|E4R4B4... - Hypoxanthine-guanine phosphoribosyltransferase OS=Pseudomonas putida (strain BIRD-1) GN=PPUBIRD1_079...	156.0	[0..1]	[184..1]
gi\|77460948, gi\|... - gi\|77460948\|ref\|YP_350455.1\| hypoxanthine-guanine phosphoribosyltransferase [Pseudomonas fluorescens...	156.0	[0..1]	[184..1]
gi\|160426966, gi... - gi\|160878300\|ref\|YP_001557268.1\| hypoxanthine phosphoribosyltransferase [Clostridium phytofermentans...	155.0	[0..11]	[183..1]
gi\|70732455, gi\|... - gi\|70732455\|ref\|YP_262217.1\| hypoxanthine-guanine phosphoribosyltransferase [Pseudomonas fluorescens...	155.0	[0..1]	[184..1]
gi\|53612816, gi\|... - gi\|67154353\|ref\|ZP_00416098.1\| Phosphoribosyltransferase [Azotobacter vinelandii AvOP], ref\|ZP_00342... gi\|226721097, gi... - gi\|67154353\|ref\|ZP_00416098.1\| Phosphoribosyltransferase [Azotobacter vinelandii AvOP], gi\|67088486\|...	154.0	[0..1]	[184..1]

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Predicted Domain #1

Region A:
Residues: [1-185]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVTLDEIKQ VYQEADCLFS EAEVEAAIGR LATAVTERLA EANPLVFCVM NGGLIVTGKL  60
   61 LPRLGFPLEI EYLHATRYGH HIFGKSLDWR VRPTVDLRGR TVLIVDDILD EGATLDAITE 120
  121 WCLQEGAAKV FTAVLVDKEH DRKARPGLKA DFTGLVSPDR FLFGYGMDYK GYWRNAPGIY 180
  181 AVKGY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.221849
Match:	1r3uA
Description:	Crystal Structure of Hypoxanthine-Guanine Phosphoribosyltransferase from Thermoanaerobacter tengcongensis
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transferase activity, transferring glycosyl groups	3.91023158228049	bayes_pls_golite062009
hypoxanthine phosphoribosyltransferase activity	3.89356447922614	bayes_pls_golite062009
adenine phosphoribosyltransferase activity	3.83339863213875	bayes_pls_golite062009
transferase activity, transferring pentosyl groups	2.53679639481311	bayes_pls_golite062009
uracil phosphoribosyltransferase activity	2.36237864658341	bayes_pls_golite062009
catalytic activity	2.30431811394775	bayes_pls_golite062009
transferase activity	2.03376808731027	bayes_pls_golite062009
amidophosphoribosyltransferase activity	1.6596316647688	bayes_pls_golite062009
ribose phosphate diphosphokinase activity	1.51875493459374	bayes_pls_golite062009
protein binding	1.02514711359042	bayes_pls_golite062009
diphosphotransferase activity	0.749909396904601	bayes_pls_golite062009
purine binding	0.700732757837347	bayes_pls_golite062009
binding	0.644392905117932	bayes_pls_golite062009
nucleobase binding	0.443428226443776	bayes_pls_golite062009
nucleic acid binding	0.439453264070391	bayes_pls_golite062009
transcription regulator activity	0.369893745269311	bayes_pls_golite062009
xanthine phosphoribosyltransferase activity	0.341988922306729	bayes_pls_golite062009
DNA binding	0.275043319532312	bayes_pls_golite062009
orotate phosphoribosyltransferase activity	0.148898393751978	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: