YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24375454, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	257 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24375454, gi|....

Description	E-value	Query Range	Subject Range
gi\|30248596, gi\|... - gi\|30248596\|ref\|NP_840666.1\| sulfate-/thiosulfate-binding protein [Nitrosomonas europaea ATCC 19718]...	158.0	[0..2]	[254..14]
gi\|25519247, gi\|... - pir\|\|AD2677 hypothetical protein Atu0820 [imported] - Agrobacterium tumefaciens (strain C58, Dupont)... gi\|17739193, gi\|... - gi\|17934728\|ref\|NP_531518.1\| ABC transporter, substrate binding protein [sulfate] [Agrobacterium tum...	157.0	[0..1]	[256..78]
gi\|91687303, gi\|... - gi\|91783349\|ref\|YP_558555.1\| ABC sulfate/thiosulfate transporter, periplasmic ligand binding protein...	157.0	[0..5]	[254..30]
gi\|71549954, gi\|... - gi\|71549954\|ref\|ZP_00670114.1\| extracellular solute-binding protein, family 1 [Nitrosomonas eutropha...	156.0	[0..1]	[254..13]
gi\|83594729, gi\|... - gi\|83594729\|ref\|YP_428481.1\| thiosulphate-binding protein [Rhodospirillum rubrum ATCC 11170], gi\|835...	154.0	[0..4]	[257..32]
gi\|78223113, gi\|... - gi\|78223113\|ref\|YP_384860.1\| thiosulphate-binding protein [Geobacter metallireducens GS-15], gi\|7819...	154.0	[0..13]	[257..26]
gi\|33576865, gi\|... - gi\|33602426\|ref\|NP_889986.1\| sulfate-binding protein precursor [Bordetella bronchiseptica RB50], gi\|...	154.0	[0..3]	[256..21]
gi\|91774975, gi\|... - gi\|91774975\|ref\|YP_544731.1\| thiosulphate-binding protein [Methylobacillus flagellatus KT], gi\|91708...	154.0	[0..2]	[254..16]
gi\|20091118, gi\|... - gi\|20091118\|ref\|NP_617193.1\| molybdenum ABC transporter, solute-binding protein [Methanosarcina acet...	154.0	[0..3]	[254..35]
gi\|222054748, gi... - gi\|222054748\|ref\|YP_002537110.1\| sulfate ABC transporter, periplasmic sulfate-binding protein [Geoba...	154.0	[0..1]	[257..14]

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Predicted Domain #1

Region A:
Residues: [1-257]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVQGAPTHTE ATTAPIELRA AGSLKAAMND IIAAYQVKSQ ANVVAQYAPS GLLLKRIQEG  60
   61 ERVDIFASAN MKHPQALVDA GAGEKVQMFA RNQLCAIAQA DVPLTSANLL DTLLAPQTKL 120
  121 GTSTPKADPA GDYAWAVFAK AEAIKTNAKS ILEAKALQLT GGPESAKPPK DRNPYGWVME 180
  181 NKQADVFLTY CTNAVLAQKE VPSLKIVALP PELAVGADYG LLVLKDANSA TTALAEFILS 240
  241 PEGQAILTGY GFQPPKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.39794
Match:	1sbpA
Description:	1.7 ANGSTROMS REFINED STRUCTURE OF SULFATE-BINDING PROTEIN INVOLVED IN ACTIVE TRANSPORT AND NOVEL MODE OF SULFATE BINDING
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
molybdate ion transmembrane transporter activity	8.48026806882195	bayes_pls_golite062009
molybdate transmembrane-transporting ATPase activity	8.48026806882195	bayes_pls_golite062009
anion transmembrane-transporting ATPase activity	7.48200101527962	bayes_pls_golite062009
inorganic anion transmembrane transporter activity	7.26077080183261	bayes_pls_golite062009
anion transmembrane transporter activity	6.90939835001184	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of substances	5.10369591387353	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	5.10318083615538	bayes_pls_golite062009
ATPase activity, coupled to movement of substances	5.10318083615538	bayes_pls_golite062009
active transmembrane transporter activity	5.08926597039825	bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity	5.08835444171664	bayes_pls_golite062009
primary active transmembrane transporter activity	5.0778580713249	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	4.79525465597321	bayes_pls_golite062009
molybdate ion binding	4.55503490638084	bayes_pls_golite062009
ATPase activity, coupled	4.39934929410381	bayes_pls_golite062009
transporter activity	4.36277471796561	bayes_pls_golite062009
ion transmembrane transporter activity	4.08406031512351	bayes_pls_golite062009
transmembrane transporter activity	4.05122336499684	bayes_pls_golite062009
ATPase activity	4.04125376161476	bayes_pls_golite062009
sulfate transmembrane-transporting ATPase activity	3.75811558044644	bayes_pls_golite062009
substrate-specific transporter activity	3.47889550245964	bayes_pls_golite062009
peptide transporter activity	2.75577307623285	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of ions	2.72822921066555	bayes_pls_golite062009
sulfate transmembrane transporter activity	2.55046013011056	bayes_pls_golite062009
hydrolase activity	2.41680852416007	bayes_pls_golite062009
cation transmembrane transporter activity	2.20802092172977	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	2.18690004317378	bayes_pls_golite062009
phosphate transmembrane transporter activity	1.98762819035198	bayes_pls_golite062009
oligopeptide transporter activity	1.91036692266394	bayes_pls_golite062009
molybdenum ion binding	1.85494643451729	bayes_pls_golite062009
nucleoside-triphosphatase activity	1.70643051049474	bayes_pls_golite062009
pyrophosphatase activity	1.65646853917778	bayes_pls_golite062009
transition metal ion transmembrane transporter activity	1.65080292688297	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	1.63520066802961	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	1.6341518946909	bayes_pls_golite062009
binding	1.54172013140566	bayes_pls_golite062009
di-, tri-valent inorganic cation transmembrane transporter activity	1.47933194981844	bayes_pls_golite062009
amine transmembrane transporter activity	0.75087224820423	bayes_pls_golite062009
polyamine transmembrane transporter activity	0.74959887541426	bayes_pls_golite062009
metal ion transmembrane transporter activity	0.447307866074763	bayes_pls_golite062009
phosphate transmembrane-transporting ATPase activity	0.283765564520529	bayes_pls_golite062009
organic acid transmembrane transporter activity	0.27904792438438	bayes_pls_golite062009
carboxylic acid transmembrane transporter activity	0.23979057207055	bayes_pls_golite062009
amine binding	0.23472639987051	bayes_pls_golite062009
polyamine-transporting ATPase activity	0.0497853931936705	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: