YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24374154, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	318 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24374154, gi|....

Description	E-value	Query Range	Subject Range
gi\|39577272, gi\|... - gi\|42525061\|ref\|NP_970441.1\| DNA polymerase III gamma and tau subunits [Bdellovibrio bacteriovorus H...	219.0	[0..3]	[318..25]
gi\|71163685, gi\|... - gi\|71275385\|ref\|ZP_00651671.1\| DNA-directed DNA polymerase [Xylella fastidiosa Dixon], gi\|71163685\|g... gi\|71898557, gi\|... - gi\|71898557\|ref\|ZP_00680728.1\| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1], gi\|71731681\|g... gi\|170730362, gi... - gi\|170730362\|ref\|YP_001775795.1\| DNA-directed DNA polymerase [Xylella fastidiosa M12], gi\|167965155\|...	218.0	[0..3]	[287..9]
gi\|48862900, gi\|... - gi\|90020982\|ref\|YP_526809.1\| DNA polymerase III subunits gamma and tau [Saccharophagus degradans 2-4...	216.0	[0..3]	[304..9]
gi\|71734194, gi\|... - gi\|71734194\|ref\|YP_274019.1\| DNA polymerase III subunits gamma and tau [Pseudomonas syringae pv. pha...	216.0	[0..3]	[301..9]
gi\|59718055, gi\|... - gi\|59801160\|ref\|YP_207872.1\| DNA polymerase III subunits gamma and tau [Neisseria gonorrhoeae FA 109... gi\|240118040 - gi\|240118040\|ref\|ZP_04732102.1\| DNA polymerase III subunits gamma and tau [Neisseria gonorrhoeae PID... gi\|240112990 - gi\|240112990\|ref\|ZP_04727480.1\| DNA polymerase III subunits gamma and tau [Neisseria gonorrhoeae MS1... gi\|240123594 - gi\|240123594\|ref\|ZP_04736550.1\| DNA polymerase III subunits gamma and tau [Neisseria gonorrhoeae PID...	215.0	[0..3]	[261..9]
gi\|9106885, gi\|1... - gi\|9106885\|gb\|AAF84614.1\|AE004002_4 DNA polymerase III subunit [Xylella fastidiosa 9a5c], gi\|1583840... gi\|11261615 - pir\|\|B82635 DNA polymerase III subunit XF1807 [imported] - Xylella fastidiosa (strain 9a5c)	215.0	[0..3]	[287..9]
gi\|71900519, gi\|... - gi\|71900519\|ref\|ZP_00682648.1\| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1], gi\|71729695\|g...	215.0	[0..3]	[287..9]
gi\|11261620 - pir\|\|D81860 DNA-directed DNA polymerase (EC 2.7.7.7) III gamma/tau chain NMA1656 [imported] - Neisse... gi\|121052454, gi... - gi\|7380298\|emb\|CAB84884.1\| DNA polymerase III tau and gamma chains [Neisseria meningitidis Z2491], g...	214.0	[0..3]	[261..9]
gi\|182631775, gi... - gi\|182681665\|ref\|YP_001829825.1\| DNA polymerase III, subunits gamma and tau [Xylella fastidiosa M23]... gi\|28198956, gi\|... - gi\|28198956\|ref\|NP_779270.1\| DNA polymerase III subunits gamma and tau [Xylella fastidiosa Temecula1...	214.0	[0..3]	[287..9]
gi\|67157250, gi\|... - gi\|67157250\|ref\|ZP_00418552.1\| DNA-directed DNA polymerase [Azotobacter vinelandii AvOP], gi\|6708551... gi\|67157250\|ref\|... - DNA-directed DNA polymerase [Azotobacter vinelandii AvOP]	214.0	[0..3]	[302..37]

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Predicted Domain #1

Region A:
Residues: [1-318]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVEHRGFDVL SLPWLDVPRQ AFLTQLQTQK VPHAQLVGID SAYGGELLSV FMARAAMCSQ  60
   61 PTHTGGCGFC KSCQLFDAGN HPDFYQIEAD GHQIKVDQIR ELCSRLSATA QQSGRRVAII 120
  121 HHSERLNSAS ANALLKTLEE PGKDTLLLLH SDTPARLMAT ISSRCQRLPF VAPSKTLIKN 180
  181 WLIQQCQIQE DVTWCLSVVG GPLKLAESLQ SNSTQPSRYQ TLLGFRKDWA QSLSSGHLCA 240
  241 SLLIISEQQI IDALKVLYLL LRQILLKNGN QDAYVQAQIG NLAAKVMGMC HSLSAMPSVN 300
  301 YLGLCQSYVL EYRDITNK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	51.39794
Match:	1xxiB
Description:	ADP Bound E. coli Clamp Loader Complex
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
DNA-directed DNA polymerase activity	6.09279996112705	bayes_pls_golite062009
DNA polymerase activity	6.04865791514294	bayes_pls_golite062009
nucleotidyltransferase activity	3.99580940620614	bayes_pls_golite062009
pyrophosphatase activity	2.23646936731119	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	1.77451606086272	bayes_pls_golite062009
catalytic activity	1.32370671504792	bayes_pls_golite062009
transferase activity	1.23626141560528	bayes_pls_golite062009
helicase activity	0.895387263223335	bayes_pls_golite062009
DNA helicase activity	0.8104901979223	bayes_pls_golite062009
nucleic acid binding	0.625617128641089	bayes_pls_golite062009
binding	0.594355060369958	bayes_pls_golite062009
nucleoside-triphosphatase activity	0.248432446853676	bayes_pls_golite062009
protein-DNA loading ATPase activity	0.24468171323128	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	0.217252531553173	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	0.215962398124297	bayes_pls_golite062009
DNA clamp loader activity	0.20238478387743	bayes_pls_golite062009
purine NTP-dependent helicase activity	0.156322124775303	bayes_pls_golite062009
ATP-dependent helicase activity	0.156322124775303	bayes_pls_golite062009
ATPase activity	0.0740243885501273	bayes_pls_golite062009
ATP-dependent DNA helicase activity	0.0398638249772338	bayes_pls_golite062009
DNA binding	0.0064778111446141	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: