YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24373290, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	738 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24373290, gi|....

Description	E-value	Query Range	Subject Range
gi\|63258971, gi\|... - gi\|66048264\|ref\|YP_238105.1\| binding-protein dependent transport system inner membrane protein [Pseu...	568.0	[0..6]	[738..20]
gi\|71737164, gi\|... - gi\|71737164\|ref\|YP_277199.1\| phosphate ABC transporter, permease protein, putative [Pseudomonas syri...	567.0	[0..6]	[738..20]
gi\|48731218, gi\|... - gi\|77461835\|ref\|YP_351342.1\| binding-protein dependent transport system inner membrane protein [Pseu...	566.0	[0..6]	[738..27]
gi\|82739705, gi\|... - gi\|82739705\|ref\|ZP_00902497.1\| phosphate ABC transporter, permease protein [Pseudomonas putida F1], ...	559.0	[0..6]	[738..28]
gi\|70733401, gi\|... - gi\|70733401\|ref\|YP_263176.1\| phosphate ABC transporter, permease protein [Pseudomonas fluorescens Pf...	556.0	[0..6]	[738..28]
gi\|84323925 - gi\|84323925\|ref\|ZP_00971990.1\| COG4590: ABC-type uncharacterized transport system, permease componen... gi\|107104470 - gi\|107104470\|ref\|ZP_01368388.1\| hypothetical protein PaerPA_01005547 [Pseudomonas aeruginosa PACS2]	556.0	[0..6]	[738..28]
gi\|94417853, gi\|... - gi\|94417853\|ref\|ZP_01297670.1\| hypothetical protein PaerP_01000636 [Pseudomonas aeruginosa PA7], gi\|...	547.0	[0..6]	[738..28]
gi\|95113355 - gi\|95113355\|emb\|CAK18083.1\| phosphate ABC transporter, permease protein [Pseudomonas entomophila L48... gi\|95113355, gi\|... - gi\|95113355\|emb\|CAK18083.1\| phosphate ABC transporter, permease protein [Pseudomonas entomophila L48...	544.0	[0..6]	[738..28]
gi\|117613507, gi... - gi\|78685576\|ref\|ZP_00850353.1\| phosphate ABC transporter, permease protein, putative [Shewanella sp....	524.0	[0..1]	[738..15]
gi\|78689412, gi\|... - gi\|78689412\|ref\|ZP_00854074.1\| phosphate ABC transporter, permease protein, putative [Shewanella sp....	516.0	[0..1]	[738..15]

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Predicted Domain #1

Region A:
Residues: [1-492]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKGGRSSRR AFKDKAAQIG VTIGGTMVFV ALLLIFFYLL YVIKPIFDSA DVTPVKSVSY  60
   61 QHAEVATLMV GADEQNEVMY RVAADGQVDF YIVADGSLLS SFTPPLPAGV SVTSAAVAAP 120
  121 SEQRFALGLS NGQALIVGIE FGLSYPNDKR LITPKLRYSA GETPITIDES GSAIHHLAFS 180
  181 FSNDKITFAY QDNNDTWRLS RLEGQENMMT EEIEWTTTSS LIPDAPKKAA HQLMTPDQRQ 240
  241 LMLQMGNKVF IYNIRDAENV DLIQVIDAEK DKSKVNNIAL LAGASSILVS YDTGVVTQYF 300
  301 QVNGPKGRLY QEIREFSDLA PVASIAAEFY RKSFAVVSPE GELSLLYTTS ERELFDKTFD 360
  361 LKNPGAIGFS PRSNSLVVEA NNKLNIFQVE NSHPEVSWSA LWNKVWYEGY PEPQFVWQST 420
  421 SGSDDFEAKL SLMPLAFGTM KAAFYAMLFA VPLSIAGAIY TAYFMSPKVR GIVKPTIEIM 480
  481 EALPTVILGF LA

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	4.82
Match:	1nr0A
Description:	Actin interacting protein 1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.594026186759984	bayes_pls_golite062009
protein binding	0.107570881796341	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [493-738]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GLWLAPLVEE HLPGLLILLI LLPTAILVSA YSWSKLPGKW KQRLPEVYQE LMLIPVICFV  60
   61 GWFSFAISPM IEVALFDGNT RQFITNELGI TFDQRNALVV GIAMGFAVIP NIFSIAEDAI 120
  121 FSVPRHLSNG SLALGATPWQ TLTRVVLLTA SPGIFSAIMI GLGRAVGETM IVLMATGNTA 180
  181 IMEWSVFEGM RTLAANIAVE MPESAIGSSH YRVLFLAAFV LFVFTFIFNT IAEVVRQRLR 240
  241 DRYSSL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.69897
Match:	2onkC
Description:	No description for 2onkC was found.

Predicted functions:

Term	Confidence	Notes
substrate-specific transmembrane transporter activity	3.90877533326679	bayes_pls_golite062009
anion transmembrane-transporting ATPase activity	3.28172962705395	bayes_pls_golite062009
anion transmembrane transporter activity	3.22955827660391	bayes_pls_golite062009
inorganic anion transmembrane transporter activity	3.14931335059246	bayes_pls_golite062009
ion transmembrane transporter activity	3.04751896510563	bayes_pls_golite062009
transporter activity	2.92901170384371	bayes_pls_golite062009
transmembrane transporter activity	2.82231503501622	bayes_pls_golite062009
active transmembrane transporter activity	2.62912035749387	bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity	2.58567076459772	bayes_pls_golite062009
primary active transmembrane transporter activity	2.58112472232827	bayes_pls_golite062009
ATPase activity, coupled to movement of substances	2.57722913421807	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	2.57722913421807	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of substances	2.57687258170314	bayes_pls_golite062009
ATPase activity, coupled	2.26533438516544	bayes_pls_golite062009
ATPase activity	2.12523930663356	bayes_pls_golite062009
substrate-specific transporter activity	2.08705004234574	bayes_pls_golite062009
nucleoside-triphosphatase activity	2.06571106810861	bayes_pls_golite062009
pyrophosphatase activity	2.02843508794757	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	2.01869168199434	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	2.01800287925825	bayes_pls_golite062009
sulfate transmembrane transporter activity	2.00943245171704	bayes_pls_golite062009
sulfate transmembrane-transporting ATPase activity	1.88742737939609	bayes_pls_golite062009
cation transmembrane transporter activity	1.84323586388655	bayes_pls_golite062009
hydrolase activity	1.27489880499396	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of ions	0.86861612741394	bayes_pls_golite062009
catalytic activity	0.79821499476005	bayes_pls_golite062009
carbohydrate transmembrane transporter activity	0.56369901852468	bayes_pls_golite062009
sugar transmembrane transporter activity	0.44915416750675	bayes_pls_golite062009
molybdate transmembrane-transporting ATPase activity	0.19552843550095	bayes_pls_golite062009
molybdate ion transmembrane transporter activity	0.19552843550095	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions:

Predicted functions: