YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24346947, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	285 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24346947, gi|....

Description	E-value	Query Range	Subject Range
STR1_ARATH - Thiosulfate/3-mercaptopyruvate sulfurtransferase 1, mitochondrial OS=Arabidopsis thaliana GN=STR1 PE...	229.0	[0..2]	[284..77]
gi\|13362857 - gi\|13362857\|dbj\|BAB36810.1\| putative thiosulfate sulfurtransferase [Escherichia coli O157:H7 str. Sa... gi\|209763320, gi... - gi\|25288801\|pir\|\|G85896 probable thiosulfate sulfurtransferase sseA [imported] - Escherichia coli (s... gi\|12516922, gi\|... - gi\|15803048\|ref\|NP_289078.1\| putative thiosulfate sulfurtransferase [Escherichia coli O157:H7 EDL933... gi\|13362857 - gi\|13362857\|dbj\|BAB36810.1\| putative thiosulfate sulfurtransferase [Escherichia coli O157:H7]	226.0	[0..1]	[284..50]
gi\|7434956 - gi\|7434956\|pir\|\|H65028 probable thiosulfate sulfurtransferase (EC 2.8.1.1) - Escherichia coli (strai... gi\|1788869, gi\|4... - gi\|49176232\|ref\|NP_417016.3\| 3-mercaptopyruvate sulfurtransferase [Escherichia coli K12], gb\|AAC7557... gi\|74313047, gi\|... - gi\|74313047\|ref\|YP_311466.1\| putative thiosulfate sulfurtransferase [Shigella sonnei Ss046], gi\|7385...	226.0	[0..1]	[284..50]
gi\|26248886, gi\|... - gi\|26248886\|ref\|NP_754926.1\| 3-mercaptopyruvate sulfurtransferase [Escherichia coli CFT073], gi\|2610...	225.0	[0..1]	[284..50]
gi\|91211848, gi\|... - gi\|91211848\|ref\|YP_541834.1\| 3-mercaptopyruvate:cyanide sulfurtransferase [Escherichia coli UTI89], ... gi\|226901397, gi... - gi\|237705031\|ref\|ZP_04535512.1\| 3-mercaptopyruvate:cyanide sulfurtransferase [Escherichia sp. 3_2_53... gi\|117624750, gi... - gi\|117624750\|ref\|YP_853663.1\| 3-mercaptopyruvate sulfurtransferase [Escherichia coli APEC O1], gi\|11...	225.0	[0..1]	[284..50]
gi\|75229147, gi\|... - gi\|75229147\|ref\|ZP_00715719.1\| COG2897: Rhodanese-related sulfurtransferase [Escherichia coli B7A], ...	225.0	[0..1]	[284..1]
gi\|82544970, gi\|... - gi\|82544970\|ref\|YP_408917.1\| putative thiosulfate sulfurtransferase [Shigella boydii Sb227], gi\|8124...	224.0	[0..1]	[284..50]
THTM_ECO57 - 3-mercaptopyruvate sulfurtransferase OS=Escherichia coli O157:H7 GN=sseA PE=3 SV=2 gi\|254794471, gi... - gi\|254794471\|ref\|YP_003079308.1\| 3-mercaptopyruvate sulfurtransferase [Escherichia coli O157:H7 str.... gi\|208820412, gi... - gi\|208820412\|ref\|ZP_03260732.1\| 3-mercaptopyruvate sulfurtransferase [Escherichia coli O157:H7 str. ... gi\|208813274, gi... - gi\|208813274\|ref\|ZP_03254603.1\| 3-mercaptopyruvate sulfurtransferase [Escherichia coli O157:H7 str. ... gi\|217327804, gi... - gi\|217327804\|ref\|ZP_03443887.1\| 3-mercaptopyruvate sulfurtransferase [Escherichia coli O157:H7 str. ... gi\|38704097 - gi\|38704097\|ref\|NP_311414.2\| 3-mercaptopyruvate sulfurtransferase [Escherichia coli O157:H7 str. Sak... gi\|209398755, gi... - gi\|209398755\|ref\|YP_002271995.1\| 3-mercaptopyruvate sulfurtransferase [Escherichia coli O157:H7 str.... gi\|189378625, gi... - gi\|189378625\|gb\|EDU97041.1\| 3-mercaptopyruvate sulfurtransferase [Escherichia coli O157:H7 str. EC50... gi\|189372287, gi... - gi\|189372287\|gb\|EDU90703.1\| 3-mercaptopyruvate sulfurtransferase [Escherichia coli O157:H7 str. EC86... gi\|208808021, gi... - gi\|208808021\|ref\|ZP_03250358.1\| 3-mercaptopyruvate sulfurtransferase [Escherichia coli O157:H7 str. ... gi\|195936667 - gi\|195936667\|ref\|ZP_03082049.1\| 3-mercaptopyruvate sulfurtransferase [Escherichia coli O157:H7 str. ... gi\|168768617, gi... - gi\|189362246\|gb\|EDU80665.1\| 3-mercaptopyruvate sulfurtransferase [Escherichia coli O157:H7 str. EC44... gi\|168761135, gi... - gi\|189368468\|gb\|EDU86884.1\| 3-mercaptopyruvate sulfurtransferase [Escherichia coli O157:H7 str. EC45... gi\|189003502, gi... - gi\|189003502\|gb\|EDU72488.1\| 3-mercaptopyruvate sulfurtransferase [Escherichia coli O157:H7 str. EC40... gi\|187770700, gi... - gi\|187770700\|gb\|EDU34544.1\| 3-mercaptopyruvate sulfurtransferase [Escherichia coli O157:H7 str. EC41... gi\|161367549 - gi\|161367549\|ref\|NP_289078.2\| 3-mercaptopyruvate sulfurtransferase [Escherichia coli O157:H7 EDL933] gi\|189356654, gi... - gi\|189356654\|gb\|EDU75073.1\| 3-mercaptopyruvate sulfurtransferase [Escherichia coli O157:H7 str. EC44... gi\|188017054, gi... - gi\|188017054\|gb\|EDU55176.1\| 3-mercaptopyruvate sulfurtransferase [Escherichia coli O157:H7 str. EC41...	223.0	[0..1]	[284..1]
gi\|161986479 - gi\|161986479\|ref\|YP_311466.2\| 3-mercaptopyruvate sulfurtransferase [Shigella sonnei Ss046] EG11600 - 3-mercaptopyruvate sulfurtransferase / 3-mercaptopyruvate sulfurtransferase; enhances serine sensiti... gi\|170082131, gi... - gi\|170082131\|ref\|YP_001731451.1\| 3-mercaptopyruvate sulfurtransferase [Escherichia coli str. K-12 su... gi\|170019196, gi... - gi\|170019196\|ref\|YP_001724150.1\| 3-mercaptopyruvate sulfurtransferase [Escherichia coli ATCC 8739], ... gi\|194427373, gi... - gi\|194427373\|ref\|ZP_03059923.1\| 3-mercaptopyruvate sulfurtransferase [Escherichia coli B171], gi\|194... gi\|193064008, gi... - gi\|193064008\|ref\|ZP_03045093.1\| 3-mercaptopyruvate sulfurtransferase [Escherichia coli E22], gi\|1929... gi\|218706024, gi... - gi\|218706024\|ref\|YP_002413543.1\| 3-mercaptopyruvate sulfurtransferase [Escherichia coli UMN026], gi\|... gi\|218361814, gi... - gi\|218555046\|ref\|YP_002387959.1\| 3-mercaptopyruvate sulfurtransferase [Escherichia coli IAI1], gi\|21... gi\|238901686, gi... - gi\|238901686\|ref\|YP_002927482.1\| 3-mercaptopyruvate sulfurtransferase [Escherichia coli BW2952], gi\|... gi\|251785846, gi... - gi\|251785846\|ref\|YP_003000150.1\| hypothetical protein B21_02375 [Escherichia coli BL21], gi\|24237811... EG11600 - 3-mercaptopyruvate sulfurtransferase / 3-mercaptopyruvate sulfurtransferase; enhances serine sensiti... gi\|253978563, gi... - gi\|254289256\|ref\|YP_003055004.1\| 3-mercaptopyruvate sulfurtransferase [Escherichia coli BL21(DE3)], ... gi\|253974396, gi... - gi\|254162495\|ref\|YP_003045603.1\| 3-mercaptopyruvate sulfurtransferase [Escherichia coli B str. REL60... gi\|157156971, gi... - gi\|157156971\|ref\|YP_001463843.1\| 3-mercaptopyruvate sulfurtransferase [Escherichia coli E24377A], gi... THTM_ECOLI - 3-mercaptopyruvate sulfurtransferase (EC 2.8.1.2) (Rhodanese-like protein) (MST) - Escherichia coli gi\|194437663, gi... - gi\|83586829\|ref\|ZP_00925460.1\| COG2897: Rhodanese-related sulfurtransferase [Escherichia coli 101-1]... gi\|124498687, gi... - gi\|124531241\|ref\|ZP_01701583.1\| 3-mercaptopyruvate sulfurtransferase [Escherichia coli B], gi\|124498... gi\|89109327, gi\|... - gi\|89109327\|ref\|AP_003107.1\| 3-mercaptopyruvate sulfurtransferase [Escherichia coli str. K-12 substr...	223.0	[0..1]	[284..1]

Back

Predicted Domain #1

Region A:
Residues: [1-285]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEYPLVSTQW LEEQLTSPEL VLLDASMAVV LGKEPILYHE PICIPRSRRF DVEEDFCDKT  60
   61 STQIHALPRF ESFVEGIAKL GIEPQSLIVI YDNQGIYSSP RAWWIFKVMG FHRVYVLDGG 120
  121 LPQWIAEDRV TSSRYQEEGI DYGVTDSAPL AAVLQYQSAK VMDAEAVLAR LDDSESAIID 180
  181 ARGATRFLGQ VSEPRPGVRS GHIPHSVNLP FGEVLNGYKM KSTTELQAIF QALVGNKALR 240
  241 IFSCGSGITA CILILASVVA GHKSAVLYDG SWADWGSRTD LPIER

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	58.39794
Match:	1urhA
Description:	The "Rhodanese" fold and catalytic mechanism of 3-mercaptopyruvate sulfotransferases: Crystal structure of SseA from Escherichia coli
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
thiosulfate sulfurtransferase activity	4.07143118207301	bayes_pls_golite062009
sulfurtransferase activity	2.90539767285523	bayes_pls_golite062009
transferase activity, transferring sulfur-containing groups	2.27106357502695	bayes_pls_golite062009
protein tyrosine phosphatase activity	0.83774799640503	bayes_pls_golite062009
binding	0.707400650337243	bayes_pls_golite062009
catalytic activity	0.687308230067573	bayes_pls_golite062009
phosphoprotein phosphatase activity	0.604322283158386	bayes_pls_golite062009
transferase activity	0.302497611306574	bayes_pls_golite062009
protein binding	0.26324773851743	bayes_pls_golite062009
phosphatase activity	0.0565207759893606	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: