YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24346281, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	335 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24346281, gi|....

Description	E-value	Query Range	Subject Range
gi\|150027068, gi... - gi\|150395553\|ref\|YP_001326020.1\| extracellular solute-binding protein [Sinorhizobium medicae WSM419]...	230.0	[0..3]	[334..7]
gi\|45914918, gi\|... - gi\|69278910\|ref\|ZP_00613918.1\| extracellular solute-binding protein, family 1 [Mesorhizobium sp. BNC...	229.0	[0..1]	[334..8]
gi\|9655040, gi\|1... - gi\|9655040\|gb\|AAF93774.1\| iron(III) ABC transporter, periplasmic iron-compound-binding protein [Vibr... gi\|11355598 - pir\|\|C82302 iron(III) ABC transporter, periplasmic iron-compound-binding protein VC0608 [imported] -... gi\|229519592, gi... - gi\|229519592\|ref\|ZP_04409035.1\| ferric iron ABC transporter iron-binding protein [Vibrio cholerae RC... gi\|229608879, gi... - gi\|229608879\|ref\|YP_002879527.1\| ferric iron ABC transporter iron-binding protein [Vibrio cholerae M... gi\|227080789, gi... - gi\|227080789\|ref\|YP_002809340.1\| iron(III) ABC transporter, periplasmic iron-compound-binding protei... gi\|229357991, gi... - gi\|229505768\|ref\|ZP_04395278.1\| ferric iron ABC transporter iron-binding protein [Vibrio cholerae BX... gi\|121728260, gi... - gi\|121728260\|ref\|ZP_01681292.1\| iron(III) ABC transporter, periplasmic iron-compound-binding protein... gi\|121587966, gi... - gi\|121587966\|ref\|ZP_01677720.1\| iron(III) ABC transporter, periplasmic iron-compound-binding protein... gi\|254850840, gi... - gi\|254850840\|ref\|ZP_05240190.1\| iron(III) ABC transporter [Vibrio cholerae MO10], gi\|254846545\|gb\|EE... gi\|124117938, gi... - gi\|153223951\|ref\|ZP_01954144.1\| iron(III) ABC transporter, periplasmic iron-compound-binding protein... gi\|229353770, gi... - gi\|229509198\|ref\|ZP_04398683.1\| ferric iron ABC transporter iron-binding protein [Vibrio cholerae B3... gi\|153818911, gi... - gi\|153818911\|ref\|ZP_01971578.1\| iron(III) ABC transporter, periplasmic iron-compound-binding protein... gi\|147674279, gi... - gi\|227116983\|ref\|YP_002818879.1\| iron(III) ABC transporter, periplasmic iron-compound-binding protei...	228.0	[0..1]	[335..16]
gi\|75829355, gi\|... - gi\|75829355\|ref\|ZP_00758661.1\| COG1840: ABC-type Fe3+ transport system, periplasmic component [Vibri... gi\|75816086 - gi\|75816086\|ref\|ZP_00746567.1\| COG1840: ABC-type Fe3+ transport system, periplasmic component [Vibri... gi\|75825972 - gi\|75825972\|ref\|ZP_00755407.1\| COG1840: ABC-type Fe3+ transport system, periplasmic component [Vibri...	226.0	[0..1]	[335..1]
tr\|A0A085SWV1\|A0... - Iron binding protein FbpA OS=Vibrio cholerae GN=fbpA PE=4 SV=1 gi\|75822450, gi\|... - gi\|75822450\|ref\|ZP_00752073.1\| COG1840: ABC-type Fe3+ transport system, periplasmic component [Vibri...	225.0	[0..1]	[335..1]
gi\|15073659 - gi\|15073659\|emb\|CAC45301.1\| Fe3+ ABC transporter [Sinorhizobium meliloti 1021] gi\|15964482 - gi\|15964482\|ref\|NP_384835.1\| putative iron binding protein [Sinorhizobium meliloti 1021]	224.0	[0..2]	[334..5]
gi\|28899265, gi\|... - gi\|28899265\|ref\|NP_798870.1\| iron(III) ABC transporter, periplasmic iron-compound-binding protein [V... gi\|28807489 - gi\|28807489\|dbj\|BAC60754.1\| iron(III) ABC transporter, periplasmic iron-compound-binding protein [Vi...	221.0	[0..1]	[335..1]
gi\|37680930, gi\|... - gi\|37680930\|ref\|NP_935539.1\| ABC-type Fe3+ transport system, periplasmic component [Vibrio vulnificu...	221.0	[0..1]	[335..1]
gi\|12720256, gi\|... - gi\|15601916\|ref\|NP_244988.1\| FbpA [Pasteurella multocida subsp. multocida str. Pm70], gi\|12720256\|gb...	221.0	[0..1]	[335..19]
gi\|114704630, gi... - gi\|114704630\|ref\|ZP_01437538.1\| ferric iron ABC transporter, periplasmic ferric iron-binding protein...	218.0	[0..1]	[333..16]

Back

Predicted Domain #1

Region A:
Residues: [1-335]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKWVTCAALI GLMSVAQSAH ADEKLTVYSY RQAFLVEPIL KRFTEETGIG VNVVFAKDGI  60
   61 AERIAREGRL SPADLVLTSD FSRLVELVEK DLTSPVQSAQ LDNNIPAQYR DPEGQWYALT 120
  121 MRVRNIYTAK DRLGPQAIRY EELADPKYKG KICTRSGKHP YNIALVASMI AHHGEADTKT 180
  181 WLQGVKTNLA RKPQGNDRGQ VQAVKEGLCD IAIGNSYYYG NMLQDPEQMS WAEAVVINFP 240
  241 NQADRGAHVN VSGMVLARHA PNKDNAIKLM EFLSGDVAQK AYAEVNMEYP VKADVAPSTL 300
  301 VASWGEFKAD QLPIFKLAEY HQAAVKLLDE VQFDL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	50.522879
Match:	1q35A
Description:	Crystal Structure of Pasteurella haemolytica Apo Ferric ion-Binding Protein A
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
ATPase activity, coupled to transmembrane movement of substances	5.10369591387353	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	5.10318083615538	bayes_pls_golite062009
ATPase activity, coupled to movement of substances	5.10318083615538	bayes_pls_golite062009
active transmembrane transporter activity	5.08926597039825	bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity	5.08835444171664	bayes_pls_golite062009
primary active transmembrane transporter activity	5.0778580713249	bayes_pls_golite062009
anion transmembrane-transporting ATPase activity	4.88991949355775	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	4.79525465597321	bayes_pls_golite062009
inorganic anion transmembrane transporter activity	4.78886400771857	bayes_pls_golite062009
ATPase activity, coupled	4.39934929410381	bayes_pls_golite062009
transporter activity	4.36277471796561	bayes_pls_golite062009
anion transmembrane transporter activity	4.20358249492678	bayes_pls_golite062009
molybdate ion transmembrane transporter activity	4.17228995326213	bayes_pls_golite062009
molybdate transmembrane-transporting ATPase activity	4.17228995326213	bayes_pls_golite062009
ion transmembrane transporter activity	4.08406031512351	bayes_pls_golite062009
transmembrane transporter activity	4.05122336499684	bayes_pls_golite062009
ATPase activity	4.04125376161476	bayes_pls_golite062009
transition metal ion transmembrane transporter activity	3.937977301755	bayes_pls_golite062009
substrate-specific transporter activity	3.47889550245964	bayes_pls_golite062009
peptide transporter activity	2.75577307623285	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of ions	2.72822921066555	bayes_pls_golite062009
cation transmembrane transporter activity	2.64589796926699	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	2.51002432976288	bayes_pls_golite062009
hydrolase activity	2.41680852416007	bayes_pls_golite062009
di-, tri-valent inorganic cation transmembrane transporter activity	2.24878435770528	bayes_pls_golite062009
oligopeptide transporter activity	1.91036692266394	bayes_pls_golite062009
iron ion transmembrane transporter activity	1.73960512999321	bayes_pls_golite062009
nucleoside-triphosphatase activity	1.70643051049474	bayes_pls_golite062009
pyrophosphatase activity	1.65646853917778	bayes_pls_golite062009
sulfate transmembrane-transporting ATPase activity	1.65531524773788	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	1.63520066802961	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	1.6341518946909	bayes_pls_golite062009
binding	1.54172013140566	bayes_pls_golite062009
metal ion transmembrane transporter activity	1.41283192099944	bayes_pls_golite062009
molybdate ion binding	1.13562285564085	bayes_pls_golite062009
amine transmembrane transporter activity	0.75087224820423	bayes_pls_golite062009
polyamine transmembrane transporter activity	0.74959887541426	bayes_pls_golite062009
sulfate transmembrane transporter activity	0.41724711755287	bayes_pls_golite062009
organic acid transmembrane transporter activity	0.27904792438438	bayes_pls_golite062009
carboxylic acid transmembrane transporter activity	0.23979057207055	bayes_pls_golite062009
amine binding	0.23472639987051	bayes_pls_golite062009
polyamine-transporting ATPase activity	0.0497853931936705	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: