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View Structure Prediction Details

Protein: MAP22_ARATH
Organism: Arabidopsis thaliana
Length: 439 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MAP22_ARATH.

Description E-value Query
Range
Subject
Range
gi|17473819, gi|... - gi|23197710|gb|AAN15382.1| putative protein [Arabidopsis thaliana], gi|17473819|gb|AAL38337.1| putat...
383.0 [0..19] [439..19]

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Predicted Domain #1
Region A:
Residues: [1-77]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASESPDVAV VAPVVENGGA ESSNGKEEQL ESELSKKLEI AEDGQEENDG EEGSKAETST  60
   61 KKKKKKNKSK KKKELPQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 58.0
Match: 1a16A
Description: AMINOPEPTIDASE P FROM E. COLI WITH THE INHIBITOR PRO-LEU
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [78-439]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QTDPPSIPVV ELFPSGEFPE GEIQEYKDDN LWRTTSEEKR ELERFEKPIY NSVRRAAEVH  60
   61 RQVRKYVRSI VKPGMLMTDI CETLENTVRK LISENGLQAG IAFPTGCSLN WVAAHWTPNS 120
  121 GDKTVLQYDD VMKLDFGTHI DGHIIDCAFT VAFNPMFDPL LAASREATYT GIKEAGIDVR 180
  181 LCDIGAAIQE VMESYEVEIN GKVFQVKSIR NLNGHSIGPY QIHAGKSVPI VKGGEQTKME 240
  241 EGEFYAIETF GSTGKGYVRE DLECSHYMKN FDAGHVPLRL PRAKQLLATI NKNFSTLAFC 300
  301 RRYLDRIGET KYLMALKNLC DSGIVQPYPP LCDVKGSYVS QFEHTILLRP TCKEVLSKGD 360
  361 DY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 102.0
Match: 1b59A
Description: Methionine aminopeptidase, insert domain; Methionine aminopeptidase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
peptidase activity 2.60615909541559 bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides 2.18503136472662 bayes_pls_golite062009
hydrolase activity 1.43646476372001 bayes_pls_golite062009
binding 1.30837875079167 bayes_pls_golite062009
nucleic acid binding 1.07337728528324 bayes_pls_golite062009
transcription regulator activity 0.977875027333104 bayes_pls_golite062009
aminopeptidase activity 0.89399203910285 bayes_pls_golite062009
DNA binding 0.772721556221145 bayes_pls_golite062009
exopeptidase activity 0.762255574851485 bayes_pls_golite062009
metallopeptidase activity 0.629480947971878 bayes_pls_golite062009
protein binding 0.378185804009078 bayes_pls_golite062009
catalytic activity 0.148551873544128 bayes_pls_golite062009
transcription factor activity 0.143705860811928 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle