YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|221324414
Organism: Bacillus subtilis subsp. subtilis str. SMY
Length: 403 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|221324414.

Description E-value Query
Range
Subject
Range
ASSY_BACLD - Argininosuccinate synthase OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / NBRC 1...
464.0 [0..1] [403..1]

Back

Predicted Domain #1
Region A:
Residues: [1-403]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEQKKVVLA YSGGLDTSVA IKWLQEQGYN VIACCLDVGE GKDLAFVQQK ALEVGATNSY  60
   61 VIDAKEEFAQ DYALISLQAH TMYEGKYPLV SALSRPLIAK KLVEIAEKED AQAIAHGCTG 120
  121 KGNDQVRFEV SIKSLNPDLE VIAPVREWQW SREEEIEYAA SRGIPIPINL DSPYSIDQNL 180
  181 WGRANECGIL EDPWAAPPEG AYDLTAPLEK TPDTPEVIEI AFEQGVPVSI DGVSYSLSEL 240
  241 ILKLNEMAGA HGVGRIDHVE NRLVGIKSRE VYECPGAMTL IKAHKELEDL TLVKEVAHFK 300
  301 PIIEQKMSEI IYNGLWFSPL KDALHAFLKE TQKHVTGIVR VKLFKGHAIV EGRKSEYSLY 360
  361 DEKLATYTKD DAFDHHAAIG FIELWGLPTK VNSIVKKKEQ IKA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 120.0
Match: 1vl2A
Description: Crystal structure of Argininosuccinate synthase (TM1780) from Thermotoga maritima at 1.65 A resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
argininosuccinate synthase activity 5.55984418125277 bayes_pls_golite062009
ligase activity 2.54636182867584 bayes_pls_golite062009
catalytic activity 1.4716728594386 bayes_pls_golite062009
binding 0.949267645607863 bayes_pls_golite062009
protein binding 0.476576076629648 bayes_pls_golite062009
asparagine synthase (glutamine-hydrolyzing) activity 0.3673193848392 bayes_pls_golite062009
ligase activity, forming carbon-nitrogen bonds 0.204705463374024 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle