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View Structure Prediction Details

Protein: LEU31_ARATH
Organism: Arabidopsis thaliana
Length: 404 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LEU31_ARATH.

Description E-value Query
Range
Subject
Range
gi|21592944 - gi|21592944|gb|AAM64894.1| 3-methyladenine DNA glycosylase, putative [Arabidopsis thaliana]
474.0 [0..1] [404..1]

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Predicted Domain #1
Region A:
Residues: [1-404]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAFLQTNIR LEIIPGRYSS LTDHKFRAPY RIRCAAASPV KKRYNITLLP GDGIGPEVIS  60
   61 VAKNVLQKAG FLQGLEFDFQ EMPFGGAALD LVGVPLPEET STAAKQSDAI LLGAIGGYKW 120
  121 DKNEKHLRPE MGLLNIRRDL NVFANLRPAT VLPQLVDAST LKKEVAQGVD MMIVRELTGG 180
  181 IYFGEPRGIT INENGEEVGF NTEIYAAHEI DRIARVAFET ARKRRGKLCS VDKANVLDAS 240
  241 ILWRKRVTAL ASEYPDVELS HMYVDNAAMQ LVRDPKQFDT IVTNNIFGDI LSDEASMITG 300
  301 SIGMLPSASL GESGPGLFEP IHGSAPDIAG QDKANPLATI LSAAMLLKYG LGEEKAAKMI 360
  361 EDAVVDALNK GFRTGDIYSP GNKLVGCKEM GEEVLKSVDS KVPV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 124.0
Match: 1cnzA
Description: 3-isopropylmalate dehydrogenase, IPMDH
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
isocitrate dehydrogenase (NAD+) activity 5.9567768649084 bayes_pls_golite062009
isocitrate dehydrogenase activity 5.76817846591752 bayes_pls_golite062009
3-isopropylmalate dehydrogenase activity 4.43187390953534 bayes_pls_golite062009
isocitrate dehydrogenase (NADP+) activity 3.47645456015586 bayes_pls_golite062009
malate dehydrogenase activity 3.17013707624362 bayes_pls_golite062009
oxidoreductase activity 2.74237430402883 bayes_pls_golite062009
catalytic activity 2.71251959637136 bayes_pls_golite062009
oxidoreductase activity, acting on CH-OH group of donors 2.46799258909805 bayes_pls_golite062009
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor 2.38235863668553 bayes_pls_golite062009
binding 1.19820115767498 bayes_pls_golite062009
malic enzyme activity 0.483776792839856 bayes_pls_golite062009
transferase activity, transferring acyl groups 0.466038297142601 bayes_pls_golite062009

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