From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
Notes: | Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 0.689852022507] |
Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
trans-Golgi network transport vesicle | 2.779E-6 | 2 | 11 | 2 | 6292 |
clathrin-coated vesicle | 2.3495E-5 | 2 | 31 | 2 | 6292 |
Golgi-associated vesicle | 3.9411E-5 | 2 | 40 | 2 | 6292 |
transport vesicle | 5.0022E-5 | 2 | 45 | 2 | 6292 |
coated vesicle | 1.7194E-4 | 2 | 83 | 2 | 6292 |
cytoplasmic vesicle | 2.8654E-4 | 2 | 107 | 2 | 6292 |
membrane-bounded vesicle | 2.8654E-4 | 2 | 107 | 2 | 6292 |
cytoplasmic membrane-bounded vesicle | 2.8654E-4 | 2 | 107 | 2 | 6292 |
vesicle | 3.0291E-4 | 2 | 110 | 2 | 6292 |
Golgi apparatus part | 3.5475E-4 | 2 | 119 | 2 | 6292 |
Golgi apparatus | 7.3441E-4 | 2 | 171 | 2 | 6292 |
trans-Golgi network transport vesicle membrane | 2.224E-3 | 2 | 7 | 1 | 6292 |
clathrin coated vesicle membrane | 4.7627E-3 | 2 | 15 | 1 | 6292 |
transport vesicle membrane | 4.7627E-3 | 2 | 15 | 1 | 6292 |
Golgi-associated vesicle membrane | 5.0798E-3 | 2 | 16 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
intracellular copper ion transport | 1.5888E-3 | 2 | 5 | 1 | 6292 |
phospholipid translocation | 2.224E-3 | 2 | 7 | 1 | 6292 |
lipid translocation | 2.224E-3 | 2 | 7 | 1 | 6292 |
copper ion transport | 3.811E-3 | 2 | 12 | 1 | 6292 |
phospholipid transport | 3.811E-3 | 2 | 12 | 1 | 6292 |
intracellular transport | 7.7118E-3 | 2 | 553 | 2 | 6292 |
establishment of localization in cell | 9.0494E-3 | 2 | 599 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.