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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 0.72197416577]
Complex Size: 2 proteins

Complex Member Proteins

Protein

 GO Cellular Component GO Biological Process GO Molecular Function
CSM1
  • nuclear envelope
  • condensed nuclear chromosome kinetochore
  • nucleolus
    		•
  • DNA replication
  • response to drug
  • meiotic chromosome segregation
  • homologous chromosome segregation
  • telomere maintenance
    		•
  • molecular_function
    		•
    LRS4
  • nucleus
  • condensed nuclear chromosome kinetochore
  • nucleolus
    		•
  • chromatin silencing at rDNA
  • homologous chromosome segregation
    		•
  • molecular_function
    		•

    Cellular Component Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    condensed nuclear chromosome kinetochore 5.9419E-5 2 49 2 6292
    condensed chromosome kinetochore 5.9419E-5 2 49 2 6292
    condensed chromosome, centromeric region 7.5032E-5 2 55 2 6292
    condensed nuclear chromosome, centromeric region 7.5032E-5 2 55 2 6292
    kinetochore 8.9432E-5 2 60 2 6292
    chromosome, centromeric region 1.1171E-4 2 67 2 6292
    condensed nuclear chromosome 1.8468E-4 2 86 2 6292
    condensed chromosome 2.2085E-4 2 94 2 6292
    nuclear chromosome part 9.0721E-4 2 190 2 6292
    nucleolus 1.1194E-3 2 211 2 6292
    nuclear chromosome 1.3075E-3 2 228 2 6292
    chromosomal part 1.413E-3 2 237 2 6292
    chromosome 1.8898E-3 2 274 2 6292
    nuclear lumen 5.1728E-3 2 453 2 6292

    Biological Process Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    homologous chromosome segregation 5.0527E-7 2 5 2 6292
    meiotic chromosome segregation 6.0632E-6 2 16 2 6292
    meiosis I 1.5567E-4 2 79 2 6292
    chromosome segregation 4.1068E-4 2 128 2 6292
    M phase of meiotic cell cycle 6.427E-4 2 160 2 6292
    meiosis 6.427E-4 2 160 2 6292
    meiotic cell cycle 6.7534E-4 2 164 2 6292
    M phase 2.1762E-3 2 294 2 6292
    cell cycle phase 3.5621E-3 2 376 2 6292
    chromatin silencing at rDNA 5.7138E-3 2 18 1 6292
    cell cycle process 6.0534E-3 2 490 2 6292
    cell cycle 6.95E-3 2 525 2 6292

    Molecular Function Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle