From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
Notes: | Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 0.820549834744] |
Complex Size: | 2 proteins |
Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
LCB4 |
|
|
|
LCB5 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
soluble fraction | 5.2295E-5 | 2 | 46 | 2 | 6292 |
membrane fraction | 2.0691E-4 | 2 | 91 | 2 | 6292 |
insoluble fraction | 2.0691E-4 | 2 | 91 | 2 | 6292 |
cell fraction | 4.1715E-4 | 2 | 129 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
calcium-mediated signaling | 1.0611E-6 | 2 | 7 | 2 | 6292 |
sphingolipid metabolic process | 2.1979E-5 | 2 | 30 | 2 | 6292 |
membrane lipid metabolic process | 2.1979E-5 | 2 | 30 | 2 | 6292 |
second-messenger-mediated signaling | 2.1979E-5 | 2 | 30 | 2 | 6292 |
intracellular signal transduction | 3.312E-4 | 2 | 115 | 2 | 6292 |
intracellular signaling pathway | 5.2022E-4 | 2 | 144 | 2 | 6292 |
cellular lipid metabolic process | 8.5067E-4 | 2 | 184 | 2 | 6292 |
signaling pathway | 8.5067E-4 | 2 | 184 | 2 | 6292 |
signal transduction | 1.1516E-3 | 2 | 214 | 2 | 6292 |
signaling process | 1.1841E-3 | 2 | 217 | 2 | 6292 |
signal transmission | 1.1841E-3 | 2 | 217 | 2 | 6292 |
lipid metabolic process | 1.4491E-3 | 2 | 240 | 2 | 6292 |
signaling | 1.598E-3 | 2 | 252 | 2 | 6292 |
response to heat | 7.6148E-3 | 2 | 24 | 1 | 6292 |
response to temperature stimulus | 9.8303E-3 | 2 | 31 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
D-erythro-sphingosine kinase activity | 5.0527E-8 | 2 | 2 | 2 | 6292 |
kinase activity | 1.2395E-3 | 2 | 222 | 2 | 6292 |
transferase activity, transferring phosphorus-containing groups | 4.4459E-3 | 2 | 420 | 2 | 6292 |