From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
Notes: | Classifier used Gene Ontology annotations. [FDR: 0.036] [SVM Score: 0.831615785609] |
Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
heteroduplex formation | 7.579E-7 | 2 | 6 | 2 | 6292 |
double-strand break repair via synthesis-dependent strand annealing | 1.0611E-6 | 2 | 7 | 2 | 6292 |
double-strand break repair via single-strand annealing | 1.819E-6 | 2 | 9 | 2 | 6292 |
double-strand break repair via homologous recombination | 1.1672E-5 | 2 | 22 | 2 | 6292 |
recombinational repair | 1.6421E-5 | 2 | 26 | 2 | 6292 |
non-recombinational repair | 2.8346E-5 | 2 | 34 | 2 | 6292 |
double-strand break repair | 8.0641E-5 | 2 | 57 | 2 | 6292 |
DNA recombination | 3.2544E-4 | 2 | 114 | 2 | 6292 |
DNA repair | 9.2646E-4 | 2 | 192 | 2 | 6292 |
response to DNA damage stimulus | 1.4011E-3 | 2 | 236 | 2 | 6292 |
DNA recombinase assembly | 1.9064E-3 | 2 | 6 | 1 | 6292 |
meiotic DNA recombinase assembly | 1.9064E-3 | 2 | 6 | 1 | 6292 |
cellular response to stress | 2.1173E-3 | 2 | 290 | 2 | 6292 |
cellular response to stimulus | 3.6193E-3 | 2 | 379 | 2 | 6292 |
telomere maintenance via recombination | 5.0798E-3 | 2 | 16 | 1 | 6292 |
response to stress | 6.2277E-3 | 2 | 497 | 2 | 6292 |
DNA metabolic process | 8.631E-3 | 2 | 585 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
DNA-dependent ATPase activity | 7.5032E-5 | 2 | 55 | 2 | 6292 |
ATPase activity, coupled | 5.5711E-4 | 2 | 149 | 2 | 6292 |
ATPase activity | 1.1194E-3 | 2 | 211 | 2 | 6292 |
protein heterodimerization activity | 1.2712E-3 | 2 | 4 | 1 | 6292 |
protein dimerization activity | 1.9064E-3 | 2 | 6 | 1 | 6292 |
DNA topoisomerase activity | 1.9064E-3 | 2 | 6 | 1 | 6292 |
nucleoside-triphosphatase activity | 2.7262E-3 | 2 | 329 | 2 | 6292 |
hydrolase activity, acting on acid anhydrides | 3.1391E-3 | 2 | 353 | 2 | 6292 |
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 3.1391E-3 | 2 | 353 | 2 | 6292 |
pyrophosphatase activity | 3.1391E-3 | 2 | 353 | 2 | 6292 |