From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
Notes: | Classfier did not use Gene Ontology annotations. [FDR: 0.089] [SVM Score: 0.74396607182] |
Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
microtubule organizing center part | 6.0632E-6 | 2 | 16 | 2 | 6292 |
microtubule organizing center | 9.8679E-5 | 2 | 63 | 2 | 6292 |
spindle pole body | 9.8679E-5 | 2 | 63 | 2 | 6292 |
spindle pole | 1.151E-4 | 2 | 68 | 2 | 6292 |
spindle | 1.9786E-4 | 2 | 89 | 2 | 6292 |
microtubule cytoskeleton | 2.8118E-4 | 2 | 106 | 2 | 6292 |
cytoskeletal part | 1.0156E-3 | 2 | 201 | 2 | 6292 |
cytoskeleton | 1.1732E-3 | 2 | 216 | 2 | 6292 |
central plaque of spindle pole body | 1.5888E-3 | 2 | 5 | 1 | 6292 |
outer plaque of spindle pole body | 1.9064E-3 | 2 | 6 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
mitosis | 2.7062E-4 | 2 | 104 | 2 | 6292 |
nuclear division | 2.8118E-4 | 2 | 106 | 2 | 6292 |
organelle fission | 3.1973E-4 | 2 | 113 | 2 | 6292 |
M phase of mitotic cell cycle | 4.1068E-4 | 2 | 128 | 2 | 6292 |
cytoskeleton organization | 1.3422E-3 | 2 | 231 | 2 | 6292 |
mitotic cell cycle | 1.6363E-3 | 2 | 255 | 2 | 6292 |
M phase | 2.1762E-3 | 2 | 294 | 2 | 6292 |
cell cycle phase | 3.5621E-3 | 2 | 376 | 2 | 6292 |
microtubule-based movement | 5.0798E-3 | 2 | 16 | 1 | 6292 |
microtubule-based transport | 5.0798E-3 | 2 | 16 | 1 | 6292 |
nuclear migration along microtubule | 5.0798E-3 | 2 | 16 | 1 | 6292 |
cytoskeleton-dependent intracellular transport | 5.7138E-3 | 2 | 18 | 1 | 6292 |
cell cycle process | 6.0534E-3 | 2 | 490 | 2 | 6292 |
nuclear migration | 6.3477E-3 | 2 | 20 | 1 | 6292 |
nucleus localization | 6.3477E-3 | 2 | 20 | 1 | 6292 |
establishment of nucleus localization | 6.3477E-3 | 2 | 20 | 1 | 6292 |
mitotic spindle elongation | 6.6645E-3 | 2 | 21 | 1 | 6292 |
spindle elongation | 6.6645E-3 | 2 | 21 | 1 | 6292 |
cell cycle | 6.95E-3 | 2 | 525 | 2 | 6292 |
microtubule nucleation | 7.2981E-3 | 2 | 23 | 1 | 6292 |
vacuole fusion, non-autophagic | 8.5646E-3 | 2 | 27 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
calcium-dependent protein binding | 3.1786E-4 | 2 | 1 | 1 | 6292 |
calcium ion binding | 2.224E-3 | 2 | 7 | 1 | 6292 |