From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
Notes: | Classfier did not use Gene Ontology annotations. [FDR: 0.021] [SVM Score: 0.875961056089] |
Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
nuclear envelope lumen | 3.0316E-7 | 2 | 4 | 2 | 6292 |
AMP-activated protein kinase complex | 7.579E-7 | 2 | 6 | 2 | 6292 |
organelle envelope lumen | 3.9411E-5 | 2 | 40 | 2 | 6292 |
nuclear envelope | 9.9543E-4 | 2 | 199 | 2 | 6292 |
endomembrane system | 3.9918E-3 | 2 | 398 | 2 | 6292 |
envelope | 6.43E-3 | 2 | 505 | 2 | 6292 |
organelle envelope | 6.43E-3 | 2 | 505 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
AMP-activated protein kinase activity | 7.579E-7 | 2 | 6 | 2 | 6292 |
protein serine/threonine kinase activity | 2.0691E-4 | 2 | 91 | 2 | 6292 |
protein kinase activity | 6.1087E-4 | 2 | 156 | 2 | 6292 |
phosphotransferase activity, alcohol group as acceptor | 9.8542E-4 | 2 | 198 | 2 | 6292 |
kinase activity | 1.2395E-3 | 2 | 222 | 2 | 6292 |
transferase activity, transferring phosphorus-containing groups | 4.4459E-3 | 2 | 420 | 2 | 6292 |