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View Protein Complex Details

Complex Overview

From Publication: Krogan N. J. et al. (2006) Global landscape of protein complexes in the yeast Saccharomyces cerevisiae. Nature. 2006 Mar 30;440(7084):637-43. Epub 2006 Mar 22.
Notes: From the published set of core protein complex predictions.
Complex Size: 3 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

cytosol 5.9093E-3 3 284 2 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

regulation of nitrogen utilization 4.2416E-6 3 8 2 6292
nitrogen utilization 2.0582E-5 3 17 2 6292
response to metal ion 2.3152E-5 3 18 2 6292
response to inorganic substance 8.9875E-5 3 35 2 6292
negative regulation of protein import into nucleus 4.768E-4 3 1 1 6292
negative regulation of intracellular transport 4.768E-4 3 1 1 6292
negative regulation of intracellular protein transport 4.768E-4 3 1 1 6292
negative regulation of nucleocytoplasmic transport 4.768E-4 3 1 1 6292
response to aluminum ion 4.768E-4 3 1 1 6292
regulation of transcription factor import into nucleus 4.768E-4 3 1 1 6292
transcription factor import into nucleus 4.768E-4 3 1 1 6292
negative regulation of transcription factor import into nucleus 4.768E-4 3 1 1 6292
cytoplasmic sequestering of transcription factor 4.768E-4 3 1 1 6292
positive regulation of transcription from RNA polymerase II promoter 5.2382E-4 3 84 2 6292
positive regulation of transcription, DNA-dependent 7.8773E-4 3 103 2 6292
positive regulation of RNA metabolic process 8.5005E-4 3 107 2 6292
positive regulation of transcription 9.3124E-4 3 112 2 6292
positive regulation of gene expression 9.3124E-4 3 112 2 6292
regulation of protein import into nucleus 9.5344E-4 3 2 1 6292
regulation of intracellular transport 9.5344E-4 3 2 1 6292
regulation of nucleocytoplasmic transport 9.5344E-4 3 2 1 6292
negative regulation of protein transport 9.5344E-4 3 2 1 6292
cytoplasmic sequestering of protein 9.5344E-4 3 2 1 6292
regulation of intracellular protein transport 9.5344E-4 3 2 1 6292
positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 1.0335E-3 3 118 2 6292
positive regulation of nitrogen compound metabolic process 1.0335E-3 3 118 2 6292
positive regulation of macromolecule biosynthetic process 1.0335E-3 3 118 2 6292
positive regulation of biosynthetic process 1.0866E-3 3 121 2 6292
positive regulation of cellular biosynthetic process 1.0866E-3 3 121 2 6292
positive regulation of macromolecule metabolic process 1.178E-3 3 126 2 6292
positive regulation of metabolic process 1.2346E-3 3 129 2 6292
positive regulation of cellular metabolic process 1.2346E-3 3 129 2 6292
positive regulation of cellular process 1.3717E-3 3 136 2 6292
positive regulation of biological process 1.3919E-3 3 137 2 6292
regulation of establishment of protein localization 1.4299E-3 3 3 1 6292
negative regulation of transport 1.4299E-3 3 3 1 6292
regulation of protein localization 1.4299E-3 3 3 1 6292
regulation of protein transport 1.4299E-3 3 3 1 6292
regulation of cellular process 2.0181E-3 3 796 3 6292
regulation of biological process 2.2389E-3 3 824 3 6292
regulation of cellular localization 2.3825E-3 3 5 1 6292
response to cadmium ion 2.3825E-3 3 5 1 6292
protein urmylation 2.8585E-3 3 6 1 6292
regulation of transcription from RNA polymerase II promoter 3.8286E-3 3 228 2 6292
response to arsenic 4.2857E-3 3 9 1 6292
regulation of transport 5.2364E-3 3 11 1 6292
regulation of localization 5.2364E-3 3 11 1 6292
biological regulation 7.1507E-3 3 1213 3 6292
transcription from RNA polymerase II promoter 8.1809E-3 3 335 2 6292
regulation of transcription, DNA-dependent 9.321E-3 3 358 2 6292
regulation of RNA metabolic process 9.5782E-3 3 363 2 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

transcription cofactor activity 1.1776E-4 3 40 2 6292
transcription factor binding 1.3628E-4 3 43 2 6292
transcription regulator activity 1.5509E-4 3 339 3 6292
transcription activator activity 2.7566E-4 3 61 2 6292
phosphoprotein binding 4.768E-4 3 1 1 6292
transcription corepressor activity 7.6106E-3 3 16 1 6292
binding 8.6823E-3 3 1294 3 6292
transcription coactivator activity 9.9809E-3 3 21 1 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle