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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 4 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

DNA replication factor A complex 9.6394E-11 4 3 3 6292
nuclear replisome 7.8517E-8 4 18 3 6292
replisome 7.8517E-8 4 18 3 6292
nuclear replication fork 1.0967E-7 4 20 3 6292
chromosome, telomeric region 2.8115E-7 4 27 3 6292
replication fork 1.1015E-6 4 42 3 6292
protein-DNA complex 2.8023E-6 4 57 3 6292
nuclear chromosome part 1.0604E-4 4 190 3 6292
nuclear chromosome 1.8288E-4 4 228 3 6292
chromosomal part 2.0528E-4 4 237 3 6292
chromosome 3.1631E-4 4 274 3 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

DNA replication, synthesis of RNA primer 9.6371E-10 4 5 3 6292
DNA unwinding involved in replication 3.5042E-8 4 14 3 6292
postreplication repair 7.8517E-8 4 18 3 6292
DNA recombination 1.0228E-7 4 114 4 6292
DNA geometric change 1.0967E-7 4 20 3 6292
DNA duplex unwinding 1.0967E-7 4 20 3 6292
double-strand break repair via homologous recombination 1.4811E-7 4 22 3 6292
recombinational repair 2.4994E-7 4 26 3 6292
DNA strand elongation 4.3185E-7 4 31 3 6292
DNA strand elongation involved in DNA replication 4.3185E-7 4 31 3 6292
nucleotide-excision repair 8.0979E-7 4 38 3 6292
double-strand break repair 2.8023E-6 4 57 3 6292
DNA conformation change 2.9548E-6 4 58 3 6292
DNA-dependent DNA replication 8.4563E-6 4 82 3 6292
DNA replication 2.8754E-5 4 123 3 6292
DNA metabolic process 7.4032E-5 4 585 4 6292
DNA repair 1.0942E-4 4 192 3 6292
response to DNA damage stimulus 2.027E-4 4 236 3 6292
cellular response to stress 3.7451E-4 4 290 3 6292
cellular response to stimulus 8.288E-4 4 379 3 6292
response to stress 1.8449E-3 4 497 3 6292
RNA biosynthetic process 1.9676E-3 4 508 3 6292
nucleic acid metabolic process 2.5494E-3 4 1415 4 6292
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 3.8261E-3 4 1566 4 6292
regulation of transposition, DNA-mediated 5.0773E-3 4 8 1 6292
negative regulation of transposition, DNA-mediated 5.0773E-3 4 8 1 6292
transposition, DNA-mediated 5.0773E-3 4 8 1 6292
negative regulation of transposition 5.7106E-3 4 9 1 6292
regulation of transposition 5.7106E-3 4 9 1 6292
cellular nitrogen compound metabolic process 6.2471E-3 4 1770 4 6292
response to stimulus 6.5381E-3 4 766 3 6292
nitrogen compound metabolic process 6.5492E-3 4 1791 4 6292
negative regulation of DNA recombination 7.6087E-3 4 12 1 6292
regulation of DNA recombination 9.5041E-3 4 15 1 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

DNA binding 2.5835E-4 4 256 3 6292
nucleic acid binding 4.351E-3 4 666 3 6292
damaged DNA binding 6.9763E-3 4 11 1 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle