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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 5 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

chromatin remodeling complex 3.6938E-5 5 99 3 6292
replication fork protection complex 1.5888E-3 5 2 1 6292
ISWI complex 3.1756E-3 5 4 1 6292
ISW1 complex 3.1756E-3 5 4 1 6292
nuclear part 4.0435E-3 5 1103 4 6292
intracellular organelle part 6.2578E-3 5 2282 5 6292
organelle part 6.2578E-3 5 2282 5 6292
outer membrane 7.5233E-3 5 178 2 6292
organelle outer membrane 7.5233E-3 5 178 2 6292
nuclear nucleosome 9.5026E-3 5 12 1 6292
nucleosome 9.5026E-3 5 12 1 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

chromatin modification 1.7977E-4 5 168 3 6292
chromatin organization 3.1545E-4 5 203 3 6292
protein-DNA complex assembly 3.7002E-4 5 39 2 6292
RNA polymerase II transcriptional preinitiation complex assembly 7.9466E-4 5 1 1 6292
regulation of RNA polymerase II transcriptional preinitiation complex assembly 7.9466E-4 5 1 1 6292
transcription of nuclear rRNA large RNA polymerase I transcript 7.9466E-4 5 1 1 6292
regulation of transcription initiation from RNA polymerase II promoter 7.9466E-4 5 1 1 6292
histone H3-K79 methylation 7.9466E-4 5 1 1 6292
transcriptional preinitiation complex assembly 7.9466E-4 5 1 1 6292
cellular component organization 1.0001E-3 5 1582 5 6292
chromatin remodeling 1.127E-3 5 68 2 6292
histone lysine methylation 1.5888E-3 5 2 1 6292
rRNA transcription 2.3825E-3 5 3 1 6292
organelle organization 4.3919E-3 5 1127 4 6292
transcription 5.8697E-3 5 552 3 6292
chromosome organization 5.9616E-3 5 555 3 6292
cellular macromolecular complex assembly 7.856E-3 5 182 2 6292
regulation of protein complex assembly 8.7135E-3 5 11 1 6292
DNA repair 8.7174E-3 5 192 2 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

nucleoside-triphosphatase activity 3.5215E-5 5 329 4 6292
hydrolase activity, acting on acid anhydrides 4.658E-5 5 353 4 6292
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 4.658E-5 5 353 4 6292
pyrophosphatase activity 4.658E-5 5 353 4 6292
ATPase activity 3.5374E-4 5 211 3 6292
TATA-binding protein binding 1.5888E-3 5 2 1 6292
hydrolase activity 1.9328E-3 5 911 4 6292
rDNA binding 5.552E-3 5 7 1 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle