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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 8 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

RSC complex 1.0519E-11 8 20 5 6292
chromatin remodeling complex 3.5574E-10 8 99 6 6292
nuclear part 3.3951E-5 8 1103 7 6292
organelle part 2.9704E-4 8 2282 8 6292
intracellular organelle part 2.9704E-4 8 2282 8 6292
protein complex 6.9038E-4 8 1137 6 6292
nucleus 2.1521E-3 8 2041 7 6292
ISWI complex 5.0773E-3 8 4 1 6292
ISW1 complex 5.0773E-3 8 4 1 6292
macromolecular complex 5.1894E-3 8 1635 6 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

chromatin remodeling 3.5047E-11 8 68 6 6292
chromatin modification 8.8861E-9 8 168 6 6292
ATP-dependent chromatin remodeling 1.5861E-8 8 26 4 6292
chromatin organization 2.7823E-8 8 203 6 6292
chromosome organization 1.1013E-5 8 555 6 6292
cellular component organization 1.5761E-5 8 1582 8 6292
double-strand break repair 3.8233E-5 8 57 3 6292
organelle organization 3.9333E-5 8 1127 7 6292
double-strand break repair via nonhomologous end joining 4.1826E-4 8 25 2 6292
non-recombinational repair 7.7767E-4 8 34 2 6292
RNA polymerase II transcriptional preinitiation complex assembly 1.2715E-3 8 1 1 6292
regulation of RNA polymerase II transcriptional preinitiation complex assembly 1.2715E-3 8 1 1 6292
transcription of nuclear rRNA large RNA polymerase I transcript 1.2715E-3 8 1 1 6292
regulation of transcription initiation from RNA polymerase II promoter 1.2715E-3 8 1 1 6292
transcriptional preinitiation complex assembly 1.2715E-3 8 1 1 6292
DNA repair 1.3988E-3 8 192 3 6292
nucleic acid metabolic process 2.3473E-3 8 1415 6 6292
response to DNA damage stimulus 2.5366E-3 8 236 3 6292
chromatin remodeling at centromere 2.5415E-3 8 2 1 6292
rRNA transcription 3.8101E-3 8 3 1 6292
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 4.1016E-3 8 1566 6 6292
cellular response to stress 4.565E-3 8 290 3 6292
cellular nitrogen compound metabolic process 7.9712E-3 8 1770 6 6292
nitrogen compound metabolic process 8.4927E-3 8 1791 6 6292
cellular response to stimulus 9.6717E-3 8 379 3 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

nucleoside-triphosphatase activity 7.6836E-9 8 329 7 6292
hydrolase activity, acting on acid anhydrides 1.2589E-8 8 353 7 6292
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 1.2589E-8 8 353 7 6292
pyrophosphatase activity 1.2589E-8 8 353 7 6292
ATPase activity 3.5107E-8 8 211 6 6292
DNA-dependent ATPase activity 3.5652E-7 8 55 4 6292
hydrolase activity 9.1453E-6 8 911 7 6292
ATPase activity, coupled 1.9641E-5 8 149 4 6292
TATA-binding protein binding 2.5415E-3 8 2 1 6292
catalytic activity 3.0336E-3 8 2150 7 6292
rDNA binding 8.8705E-3 8 7 1 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle