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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 5 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

chromatin remodeling complex 3.6938E-5 5 99 3 6292
nuclear part 1.6432E-4 5 1103 5 6292
chromatin accessibility complex 3.1756E-3 5 4 1 6292
ISWI complex 3.1756E-3 5 4 1 6292
ISW1 complex 3.1756E-3 5 4 1 6292
nucleus 3.5796E-3 5 2041 5 6292
organelle part 6.2578E-3 5 2282 5 6292
intracellular organelle part 6.2578E-3 5 2282 5 6292
nuclear nucleosome 9.5026E-3 5 12 1 6292
nucleosome 9.5026E-3 5 12 1 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

chromatin organization 5.1306E-6 5 203 4 6292
chromatin remodeling 1.1891E-5 5 68 3 6292
chromatin modification 1.7977E-4 5 168 3 6292
chromosome organization 2.787E-4 5 555 4 6292
chromatin assembly or disassembly 2.9749E-4 5 35 2 6292
nucleic acid metabolic process 5.7208E-4 5 1415 5 6292
RNA polymerase II transcriptional preinitiation complex assembly 7.9466E-4 5 1 1 6292
regulation of RNA polymerase II transcriptional preinitiation complex assembly 7.9466E-4 5 1 1 6292
transcription of nuclear rRNA large RNA polymerase I transcript 7.9466E-4 5 1 1 6292
regulation of transcription initiation from RNA polymerase II promoter 7.9466E-4 5 1 1 6292
transcriptional preinitiation complex assembly 7.9466E-4 5 1 1 6292
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 9.5045E-4 5 1566 5 6292
cellular component organization 1.0001E-3 5 1582 5 6292
cellular nitrogen compound metabolic process 1.7545E-3 5 1770 5 6292
nitrogen compound metabolic process 1.8612E-3 5 1791 5 6292
cellular response to stimulus 1.9794E-3 5 379 3 6292
rRNA transcription 2.3825E-3 5 3 1 6292
nucleosome positioning 2.3825E-3 5 3 1 6292
negative regulation of transcription from RNA polymerase II promoter by pheromones 3.1756E-3 5 4 1 6292
negative regulation of gene-specific transcription from RNA polymerase II promoter 3.1756E-3 5 4 1 6292
negative regulation of gene-specific transcription 3.1756E-3 5 4 1 6292
negative regulation of transcription by pheromones 3.1756E-3 5 4 1 6292
organelle organization 4.3919E-3 5 1127 4 6292
transcription, DNA-dependent 4.4943E-3 5 503 3 6292
RNA biosynthetic process 4.6241E-3 5 508 3 6292
transcription 5.8697E-3 5 552 3 6292
cellular macromolecule metabolic process 6.2991E-3 5 2285 5 6292
macromolecule metabolic process 7.2329E-3 5 2349 5 6292
gene-specific transcription from RNA polymerase II promoter 7.9239E-3 5 10 1 6292
regulation of transcription by pheromones 7.9239E-3 5 10 1 6292
regulation of transcription from RNA polymerase II promoter by pheromones 7.9239E-3 5 10 1 6292
cellular response to pheromone 7.9239E-3 5 10 1 6292
regulation of gene-specific transcription from RNA polymerase II promoter 7.9239E-3 5 10 1 6292
regulation of protein complex assembly 8.7135E-3 5 11 1 6292
DNA repair 8.7174E-3 5 192 2 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

ATPase activity 5.9889E-6 5 211 4 6292
nucleoside-triphosphatase activity 3.5215E-5 5 329 4 6292
hydrolase activity, acting on acid anhydrides 4.658E-5 5 353 4 6292
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 4.658E-5 5 353 4 6292
pyrophosphatase activity 4.658E-5 5 353 4 6292
TATA-binding protein binding 1.5888E-3 5 2 1 6292
hydrolase activity 1.9328E-3 5 911 4 6292
rDNA binding 5.552E-3 5 7 1 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle