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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 4 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

cytosolic large ribosomal subunit 3.2762E-6 4 60 3 6292
cytosolic ribosome 1.5876E-5 4 101 3 6292
large ribosomal subunit 2.0538E-5 4 110 3 6292
cytosolic part 2.8056E-5 4 122 3 6292
ribosomal subunit 9.4772E-5 4 183 3 6292
cytosol 3.5193E-4 4 284 3 6292
ribosome 3.7451E-4 4 290 3 6292
non-membrane-bounded organelle 5.368E-4 4 959 4 6292
intracellular non-membrane-bounded organelle 5.368E-4 4 959 4 6292
ribonucleoprotein complex 2.0368E-3 4 514 3 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

ribosomal large subunit assembly 2.4654E-4 4 41 2 6292
ribosomal subunit assembly 4.4515E-4 4 55 2 6292
ribosome assembly 6.0317E-4 4 64 2 6292
ribosomal large subunit biogenesis 6.2218E-4 4 65 2 6292
organelle assembly 7.0115E-4 4 69 2 6292
translation 8.0953E-4 4 376 3 6292
ribonucleoprotein complex assembly 1.2449E-3 4 92 2 6292
cellular macromolecular complex assembly 4.8049E-3 4 182 2 6292
cellular macromolecular complex subunit organization 9.5855E-3 4 259 2 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

RNA binding 1.1397E-5 4 367 4 6292
nucleic acid binding 1.2452E-4 4 666 4 6292
structural constituent of ribosome 1.4716E-4 4 212 3 6292
structural molecule activity 5.9551E-4 4 339 3 6292
5S rRNA binding 1.2712E-3 4 2 1 6292
binding 1.7823E-3 4 1294 4 6292
rRNA primary transcript binding 3.1756E-3 4 5 1 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle