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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 4 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

RSC complex 5.7381E-5 4 20 2 6292
nuclear part 9.4015E-4 4 1103 4 6292
chromatin remodeling complex 1.4406E-3 4 99 2 6292
nuclear chromosome 7.4744E-3 4 228 2 6292
nuclear nucleosome 7.6087E-3 4 12 1 6292
nucleosome 7.6087E-3 4 12 1 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

ATP-dependent chromatin remodeling 9.8027E-5 4 26 2 6292
DNA repair 1.0942E-4 4 192 3 6292
chromatin organization 1.2926E-4 4 203 3 6292
response to DNA damage stimulus 2.027E-4 4 236 3 6292
cellular response to stress 3.7451E-4 4 290 3 6292
double-strand break repair 4.7822E-4 4 57 2 6292
RNA polymerase II transcriptional preinitiation complex assembly 6.3573E-4 4 1 1 6292
regulation of RNA polymerase II transcriptional preinitiation complex assembly 6.3573E-4 4 1 1 6292
transcription of nuclear rRNA large RNA polymerase I transcript 6.3573E-4 4 1 1 6292
regulation of transcription initiation from RNA polymerase II promoter 6.3573E-4 4 1 1 6292
transcriptional preinitiation complex assembly 6.3573E-4 4 1 1 6292
chromatin remodeling 6.8098E-4 4 68 2 6292
cellular response to stimulus 8.288E-4 4 379 3 6292
chromatin remodeling at centromere 1.2712E-3 4 2 1 6292
response to stress 1.8449E-3 4 497 3 6292
rRNA transcription 1.9063E-3 4 3 1 6292
nucleic acid metabolic process 2.5494E-3 4 1415 4 6292
chromosome organization 2.5518E-3 4 555 3 6292
DNA metabolic process 2.9778E-3 4 585 3 6292
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 3.8261E-3 4 1566 4 6292
cellular component organization 3.9851E-3 4 1582 4 6292
chromatin modification 4.1046E-3 4 168 2 6292
cellular nitrogen compound metabolic process 6.2471E-3 4 1770 4 6292
response to stimulus 6.5381E-3 4 766 3 6292
nitrogen compound metabolic process 6.5492E-3 4 1791 4 6292
regulation of protein complex assembly 6.9763E-3 4 11 1 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

ATPase activity 1.4509E-4 4 211 3 6292
DNA-dependent ATPase activity 4.4515E-4 4 55 2 6292
nucleoside-triphosphatase activity 5.4488E-4 4 329 3 6292
hydrolase activity, acting on acid anhydrides 6.7144E-4 4 353 3 6292
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 6.7144E-4 4 353 3 6292
pyrophosphatase activity 6.7144E-4 4 353 3 6292
TATA-binding protein binding 1.2712E-3 4 2 1 6292
ATPase activity, coupled 3.2394E-3 4 149 2 6292
rDNA binding 4.4437E-3 4 7 1 6292
DNA binding 9.3704E-3 4 256 2 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle