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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 8 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

cytosolic ribosome 4.1685E-6 8 101 4 6292
cytosolic part 8.871E-6 8 122 4 6292
non-membrane-bounded organelle 1.3016E-5 8 959 7 6292
intracellular non-membrane-bounded organelle 1.3016E-5 8 959 7 6292
ribosomal subunit 4.4245E-5 8 183 4 6292
ribonucleoprotein complex 1.6235E-4 8 514 5 6292
90S preribosome 1.9058E-4 8 17 2 6292
cytosol 2.4634E-4 8 284 4 6292
ribosome 2.671E-4 8 290 4 6292
preribosome 7.7767E-4 8 34 2 6292
cytosolic small ribosomal subunit 9.7204E-4 8 38 2 6292
nucleolus 1.8378E-3 8 211 3 6292
cytosolic large ribosomal subunit 2.4133E-3 8 60 2 6292
small ribosomal subunit 3.5536E-3 8 73 2 6292
intracellular organelle part 4.4856E-3 8 2282 7 6292
organelle part 4.4856E-3 8 2282 7 6292
nuclear outer membrane 4.9014E-3 8 86 2 6292
nuclear membrane 6.2001E-3 8 97 2 6292
large ribosomal subunit 7.9172E-3 8 110 2 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

ribosome biogenesis 1.094E-8 8 346 7 6292
ribonucleoprotein complex biogenesis 1.8872E-8 8 374 7 6292
maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 3.8367E-7 8 13 3 6292
cellular component biogenesis 1.3986E-6 8 694 7 6292
translation 3.5782E-5 8 376 5 6292
maturation of SSU-rRNA 4.2427E-5 8 59 3 6292
rRNA processing 4.2742E-4 8 128 3 6292
rRNA metabolic process 5.2205E-4 8 137 3 6292
gene expression 1.3613E-3 8 1283 6 6292
ncRNA processing 1.9402E-3 8 215 3 6292
ribosomal subunit assembly 2.0312E-3 8 55 2 6292
regulation of translation 2.1802E-3 8 57 2 6292
posttranscriptional regulation of gene expression 2.4935E-3 8 61 2 6292
ribosome assembly 2.7417E-3 8 64 2 6292
regulation of cellular protein metabolic process 3.0901E-3 8 68 2 6292
organelle assembly 3.1803E-3 8 69 2 6292
ncRNA metabolic process 3.2376E-3 8 257 3 6292
regulation of protein metabolic process 3.6499E-3 8 74 2 6292
cellular protein metabolic process 5.103E-3 8 1074 5 6292
ribonucleoprotein complex assembly 5.5921E-3 8 92 2 6292
protein metabolic process 6.5695E-3 8 1136 5 6292
cellular macromolecule biosynthetic process 7.9943E-3 8 1187 5 6292
macromolecule biosynthetic process 8.0545E-3 8 1189 5 6292
RNA processing 9.7426E-3 8 380 3 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

structural constituent of ribosome 2.1368E-6 8 212 5 6292
structural molecule activity 2.1584E-5 8 339 5 6292
RNA binding 8.8446E-3 8 367 3 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle