YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 7 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

non-membrane-bounded organelle 1.8755E-6 7 959 7 6292
intracellular non-membrane-bounded organelle 1.8755E-6 7 959 7 6292
nucleolus 3.9747E-5 7 211 4 6292
ribonucleoprotein complex 6.5267E-5 7 514 5 6292
nuclear outer membrane 8.2954E-5 7 86 3 6292
nuclear membrane 1.1888E-4 7 97 3 6292
90S preribosome 1.4316E-4 7 17 2 6292
preribosome 5.8524E-4 7 34 2 6292
outer membrane 7.1655E-4 7 178 3 6292
organelle outer membrane 7.1655E-4 7 178 3 6292
cytosolic small ribosomal subunit 7.3181E-4 7 38 2 6292
nuclear lumen 7.7894E-4 7 453 4 6292
nuclear envelope 9.9288E-4 7 199 3 6292
nuclear membrane-endoplasmic reticulum network 1.5515E-3 7 232 3 6292
box C/D snoRNP complex 2.224E-3 7 2 1 6292
small nucleolar ribonucleoprotein complex 2.6131E-3 7 72 2 6292
small ribosomal subunit 2.6853E-3 7 73 2 6292
ribosome 2.9533E-3 7 290 3 6292
organelle lumen 3.2392E-3 7 660 4 6292
intracellular organelle lumen 3.2392E-3 7 660 4 6292
membrane-enclosed lumen 4.0336E-3 7 700 4 6292
cytosolic ribosome 5.0837E-3 7 101 2 6292
endomembrane system 7.2588E-3 7 398 3 6292
cytosolic part 7.3476E-3 7 122 2 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

maturation of SSU-rRNA 1.2631E-9 7 59 5 6292
ribosome biogenesis 1.4353E-9 7 346 7 6292
ribonucleoprotein complex biogenesis 2.486E-9 7 374 7 6292
rRNA processing 6.5525E-8 7 128 5 6292
rRNA metabolic process 9.2297E-8 7 137 5 6292
cellular component biogenesis 1.9331E-7 7 694 7 6292
maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 2.4008E-7 7 13 3 6292
ncRNA processing 8.837E-7 7 215 5 6292
ncRNA metabolic process 2.1485E-6 7 257 5 6292
RNA processing 1.4865E-5 7 380 5 6292
RNA metabolic process 1.2754E-3 7 954 5 6292
regulation of translation 1.6447E-3 7 57 2 6292
posttranscriptional regulation of gene expression 1.8819E-3 7 61 2 6292
regulation of cellular protein metabolic process 2.3339E-3 7 68 2 6292
regulation of protein metabolic process 2.7584E-3 7 74 2 6292
gene expression 5.0816E-3 7 1283 5 6292
nucleic acid metabolic process 7.9545E-3 7 1415 5 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle