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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 7 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

nucleolus 9.029E-9 7 211 6 6292
small nucleolar ribonucleoprotein complex 5.3771E-7 7 72 4 6292
nuclear lumen 8.8765E-7 7 453 6 6292
nuclear outer membrane 1.1039E-6 7 86 4 6292
nuclear membrane 1.7936E-6 7 97 4 6292
non-membrane-bounded organelle 1.8755E-6 7 959 7 6292
intracellular non-membrane-bounded organelle 1.8755E-6 7 959 7 6292
organelle lumen 8.3215E-6 7 660 6 6292
intracellular organelle lumen 8.3215E-6 7 660 6 6292
membrane-enclosed lumen 1.1789E-5 7 700 6 6292
outer membrane 2.0283E-5 7 178 4 6292
organelle outer membrane 2.0283E-5 7 178 4 6292
nuclear envelope 3.154E-5 7 199 4 6292
nuclear membrane-endoplasmic reticulum network 5.7767E-5 7 232 4 6292
ribonucleoprotein complex 6.5267E-5 7 514 5 6292
nuclear part 1.7083E-4 7 1103 6 6292
nucleus 3.7528E-4 7 2041 7 6292
endomembrane system 4.7362E-4 7 398 4 6292
nucleolar part 1.0268E-3 7 45 2 6292
envelope 1.1796E-3 7 505 4 6292
organelle envelope 1.1796E-3 7 505 4 6292
box C/D snoRNP complex 2.224E-3 7 2 1 6292
box H/ACA snoRNP complex 2.224E-3 7 2 1 6292
membrane part 3.276E-3 7 662 4 6292
organelle membrane 3.8647E-3 7 692 4 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

ribosome biogenesis 1.4353E-9 7 346 7 6292
ribonucleoprotein complex biogenesis 2.486E-9 7 374 7 6292
rRNA processing 6.5525E-8 7 128 5 6292
rRNA metabolic process 9.2297E-8 7 137 5 6292
cellular component biogenesis 1.9331E-7 7 694 7 6292
maturation of SSU-rRNA 2.3907E-7 7 59 4 6292
rRNA modification 6.8335E-7 7 18 3 6292
ncRNA processing 8.837E-7 7 215 5 6292
ncRNA metabolic process 2.1485E-6 7 257 5 6292
RNA processing 1.4865E-5 7 380 5 6292
RNA modification 4.4713E-5 7 70 3 6292
RNA metabolic process 7.3069E-5 7 954 6 6292
gene expression 4.1171E-4 7 1283 6 6292
nucleic acid metabolic process 7.2556E-4 7 1415 6 6292
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 1.3005E-3 7 1566 6 6292
cellular nitrogen compound metabolic process 2.6186E-3 7 1770 6 6292
nitrogen compound metabolic process 2.8003E-3 7 1791 6 6292
rRNA pseudouridine synthesis 4.4437E-3 7 4 1 6292
regulation of transcription, mating-type specific 5.552E-3 7 5 1 6292
snoRNA 3'-end processing 5.552E-3 7 5 1 6292
snoRNA processing 7.7654E-3 7 7 1 6292
pseudouridine synthesis 9.9746E-3 7 9 1 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

pseudouridylate synthase activity 5.552E-3 7 5 1 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle